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Caching noise levels

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1583

#1583 In SpikeInterface/spikeinterface;

· by yger was closed on Jun 28, 2023

Neo sorting refactor

enhancementNew feature or requestNew feature or request

extractorsRelated to extractors moduleRelated to extractors module

NEOProblem related to NEO IOProblem related to NEO IO

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1626

#1626 In SpikeInterface/spikeinterface;

· by h-mayorquin was closed on Jul 6, 2023

Make write to binary open and close per chunk

coreChanges to core moduleChanges to core module

ioProblems related to IO operations (memory, multiprocessing, etc.)Problems related to IO operations (memory, multiprocessing, etc.)

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1602

#1602 In SpikeInterface/spikeinterface;

· by h-mayorquin was closed on Jul 3, 2023

Benchmark motion

sortingcomponentsRelated to sortingcomponents moduleRelated to sortingcomponents module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1438

#1438 In SpikeInterface/spikeinterface;

· by samuelgarcia was closed on Jun 28, 2023

Save motion and skip preprocessing option in Kilosort2.5

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1418

#1418 In SpikeInterface/spikeinterface;

· by samuelgarcia was closed on Jun 6, 2023

Added cleanup of temp files after Kilosort run

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1709

#1709 In SpikeInterface/spikeinterface;

· by DradeAW was closed on Jun 8, 2023

Deal with unsigned int to int conversion

coreChanges to core moduleChanges to core module

preprocessingRelated to preprocessing moduleRelated to preprocessing module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1707

#1707 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jun 27, 2023

Add recursive=True when caching objects before container

bugSomething isn't workingSomething isn't working

containerIssues related to container (docker/singularity) versions of sortersIssues related to container (docker/singularity) versions of sorters

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1698

#1698 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jun 28, 2023

Add preprocessing for padding traces

enhancementNew feature or requestNew feature or request

preprocessingRelated to preprocessing moduleRelated to preprocessing module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1706

#1706 In SpikeInterface/spikeinterface;

· by h-mayorquin was closed on Jun 27, 2023

Fix SharedMem warning/errors

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1704

#1704 In SpikeInterface/spikeinterface;

· by samuelgarcia was closed on Jun 28, 2023

Fix KS padded recording

bugSomething isn't workingSomething isn't working

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1766

#1766 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 3, 2023

Add GPU container tests

containerIssues related to container (docker/singularity) versions of sortersIssues related to container (docker/singularity) versions of sorters

testingRelated to test routinesRelated to test routines

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1767

#1767 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 4, 2023

Deprecate run_*** functions

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1768

#1768 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 4, 2023

Prepare release 0.98.0

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1769

#1769 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 7, 2023

Optional check_spike_frames in sorting.frame_slice

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1771

#1771 In SpikeInterface/spikeinterface;

· by TomBugnon was closed on Jul 4, 2023

Fix <code>sampling_frequency_max_diff</code> kwarg for recording concat

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1770

#1770 In SpikeInterface/spikeinterface;

· by TomBugnon was closed on Jul 5, 2023

Exclude end_frame in PhyKilosort get_unit_spike_train

extractorsRelated to extractors moduleRelated to extractors module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1772

#1772 In SpikeInterface/spikeinterface;

· by TomBugnon was closed on Jul 4, 2023

Make recording JSON relative_to output_folder default for BaseSorter

enhancementNew feature or requestNew feature or request

sortersRelated to sorters moduleRelated to sorters module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1753

#1753 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 4, 2023

Fix lazy generator test

testingRelated to test routinesRelated to test routines

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1756

#1756 In SpikeInterface/spikeinterface;

· by h-mayorquin was closed on Jul 5, 2023

Check probe in waveform extractor and add <code>has_probe</code> method

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1777

#1777 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 6, 2023

Fixed <code>num_chan</code> warning and propagate to remaining instances

coreChanges to core moduleChanges to core module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1776

#1776 In SpikeInterface/spikeinterface;

· by DradeAW was closed on Jul 4, 2023

Add _is_json_serializable to extractor

coreChanges to core moduleChanges to core module

enhancementNew feature or requestNew feature or request

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1775

#1775 In SpikeInterface/spikeinterface;

· by samuelgarcia was closed on Jul 5, 2023

Simplify CellExplorer sorting with pymat reader

extractorsRelated to extractors moduleRelated to extractors module

refactorRefactor of code, with no change to functionalityRefactor of code, with no change to functionality

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1780

#1780 In SpikeInterface/spikeinterface;

· by h-mayorquin was closed on Jul 5, 2023

Pass tmp_folder as parameter for <code>compute_principal_components</code>

postprocessingRelated to postprocessing moduleRelated to postprocessing module

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1762

#1762 In SpikeInterface/spikeinterface;

· by maxjuv was closed on Jul 4, 2023

Make action more windows-friendly

containerIssues related to container (docker/singularity) versions of sortersIssues related to container (docker/singularity) versions of sorters

testingRelated to test routinesRelated to test routines

Status: Merged (completed).

SpikeInterface/spikeinterfacenumber 1765

#1765 In SpikeInterface/spikeinterface;

· by alejoe91 was closed on Jul 6, 2023