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Updated fastp version to 1.3.1, included download of parallel.py, correct install directories, and checked for parallel.py installation. Testing parallel.py still in the works.
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build-files/fastp/1.3.0/Dockerfile

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@@ -1,6 +1,6 @@
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FROM ubuntu:noble AS app
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ARG FASTP_VER="1.3.0"
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ARG FASTP_VER="1.3.1"
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LABEL base.image="ubuntu:noble"
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LABEL dockerfile.version="1"
@@ -14,21 +14,26 @@ LABEL maintainer.email="kutluhan.incekara@ct.gov"
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LABEL maintainer2="Raheel Ahmed"
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LABEL maintainer2.email="raheelsyedahmed@gmail.com"
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WORKDIR /opt
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WORKDIR /usr/local/bin
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RUN apt-get update && apt-get install -y --no-install-recommends \
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wget \
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ca-certificates \
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jq \
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python3 \
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python-is-python3 \
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procps && \
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apt-get autoclean && rm -rf /var/lib/apt/lists/*
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RUN wget http://opengene.org/fastp/fastp.${FASTP_VER} && \
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mv fastp.${FASTP_VER} fastp && \
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chmod a+x ./fastp
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ENV PATH="/opt:$PATH" \
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LC_ALL=C
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RUN wget https://raw.githubusercontent.com/OpenGene/fastp/v${FASTP_VER}/parallel.py \
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-O /usr/local/bin/parallel.py && \
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chmod +x /usr/local/bin/parallel.py
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ENV LC_ALL=C
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WORKDIR /data
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@@ -47,6 +52,7 @@ RUN fastp --help && \
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RUN jq --help && \
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jq --version
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RUN parallel.py -h
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# downloading sars-cov-2 fastq test files
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RUN wget -q \

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