v1.5.2

Bump Version 1.5.2:

• Fixed issue and added SnpEff commands to running log
• Added the option to define longer 'short-ranges' up to 99,999 bases
• Fixed a bug where dashes were not being read as N's
• Added support for Baka generated gbk files.
• Cleaned the gbk parser code
• Updated signatures to support MatrixExtra S4 calls
• Removed dead code and performed several minor compatibility updates

v1.5.1

Bug fixes, performance improvements for mega datasets, explicit checking for OpenMP support and improved testing

v1.5

LDWeaver v1.5 adds support to analyse mega-scale datasets that involve >2^31 sparse entries after converting to sparse formats. This requires two suggested dependencies spam and spam64.

Moved tree plotting packages from imports to suggests.

Minor performance enhancements and bug fixes.

Several changes to README.md

v1.4

LDWeaver v1.4 drops the genbankr dependency that was causing installation issues with Bioconductor 3.18 due to depreciation (https://bioconductor.org/packages/release/bioc/html/genbankr.html).

v1.3.1

LDWeaver can perform SNP annotations without requiring path to snpEff.jar

v1.2

Add support for SNP only alignments

v1.1.1

Bug fix and remove C++11 dependency for Conda

v1.1

Reduce dependencies and improve performance. Added link to bioRxiv paper

Initial Release

Primary release of LDWeaver