Skip to content

Conversation

@GeneCodeSavvy
Copy link
Collaborator

@GeneCodeSavvy GeneCodeSavvy commented Aug 5, 2025

This PR closes #244

I have not pushed the tests. They will fail due to #359
I will push the tests, once the mentioned PR is merged, fixing the backport issue

@jakebeal
Copy link
Contributor

This is looking good to me; holding off on formally approving until #359 is resolved and the tests are pushed.

Copy link
Contributor

@Gonza10V Gonza10V left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Hi This looks good to me too, @jakebeal please merge when you aprrove it. Now #359 is merged so this should follow.

Copy link
Contributor

@jakebeal jakebeal left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

#359 may be merged, but this cannot be merged until it has tests added. @GeneCodeSavvy , can you please push the tests?

@GeneCodeSavvy GeneCodeSavvy force-pushed the feature/sbol_convertor_attachment_objects branch from 292e7fc to 5d1b062 Compare October 21, 2025 16:20
@GeneCodeSavvy
Copy link
Collaborator Author

tests are failing due to unrelated errors

FAILED test/test_calculate_sequences.py::TestCalculateSequences::test_calculate_sequences - urllib.error.HTTPError: HTTP Error 503: Service Unavailable
FAILED test/test_calculate_sequences.py::TestCalculateSequences::test_circular_calculation - urllib.error.HTTPError: HTTP Error 503: Service Unavailable
= 2 failed, 78 passed, 1 skipped, 1 xfailed, 1001 warnings in 82.88s (0:01:22) =

@jakebeal
Copy link
Contributor

Re-running the failing tests gets past the rate-limits on the external services.
I've filed #368 for preventing these types of rate-limiting failures.

Copy link
Contributor

@jakebeal jakebeal left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I see test files, but not yet a test that actually makes use of them.

@GeneCodeSavvy
Copy link
Collaborator Author

GeneCodeSavvy commented Oct 25, 2025

I see test files, but not yet a test that actually makes use of them.

yep, i was waiting for some clarity about the tests. I have added the tests now

@GeneCodeSavvy GeneCodeSavvy force-pushed the feature/sbol_convertor_attachment_objects branch from c40da2a to 8bed8ce Compare October 25, 2025 19:24
@GeneCodeSavvy
Copy link
Collaborator Author

@jakebeal the test are passing now

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

SBOL 2-3 converter - Attachment (Priority 2)

4 participants