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SBOL Utilities 1.0-alpha17

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@jakebeal jakebeal released this 14 Apr 14:11
1.0a17
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This release of SBOL Utilities includes the following utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.
  • sbol-converter converts between any of the SBOL3, SBOL2, GenBank, and FASTA formats (plus specific converters: sbol2-to-sbol3, sbol3-to-sbol2, sbol-to-genbank, genbank-to-sbol, sbol-to-fasta, and fasta-to-sbol)
  • sbol-diff computes and reports the difference between two SBOL3 documents.

In addition, for python users SBOL Utilities provides sequence and component packages to simplify common tasks with those types of objects.

New in this release:

  • Experimental python-native converter between GenBank and SBOL3
  • Support for Python 3.11
  • Utilities with "2" names have been changed to "to" (e.g., "fasta-to-sbol" instead of "fasta2sbol")

Full Changelog: 1.0a16...1.0a17

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