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SBOL Utilities 1.0-alpha9

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@jakebeal jakebeal released this 18 Sep 19:04
· 411 commits to main since this release
1.0a9
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Early release of SBOL Utilities with four utilities:

  • graph-sbol uses graphviz to render the object tree in an SBOL Document.
  • excel-to-sbol extracts SBOL parts and libraries from an Excel file (an SBOL3 version of the SBOL2 Excel-to-SBOL utility)
  • sbol-expand-derivations searches through an SBOL file for CombinatorialDerivation objects and expands them to create a library of all of the specific constructs.
  • sbol-calculate-sequences attempts to calculate the sequence of any DNA Component that can be fully specified from the sequences of its sub-components.

New this release:

  • excel-to-sbol supports sourcing of GenBank and FASTA from arbitrary URLs, trims extensions
  • Additional helper functions for file extensions and identity manipulations
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