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Askomics #5

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087209d
Fix typo
cjmyers Sep 11, 2023
4eceb2a
Update docker-compose.yml
cjmyers Sep 11, 2023
557a909
Update docker-compose.yml
cjmyers Sep 11, 2023
72194e0
virtuoso multiuser snapshot
PeterHindes Sep 11, 2024
c67bba6
Merge pull request #3 from SynBioHub/PeterHindes-patch-1
PeterHindes Sep 11, 2024
e03e5fc
add virtuoso volume to elasticsearch docker add more dependencies to …
Sep 25, 2024
547a131
add virtuoso as dependency to elasticsearch docker
Sep 25, 2024
6a973db
add privileged
Sep 26, 2024
4c0b48f
Update README.md
danielfang97 Oct 7, 2024
60aea4d
changed virtuoso image
danielfang97 Jan 31, 2025
eb3cfb5
Merge branch 'release' into askomics
danielfang97 Feb 1, 2025
464e817
Merge branch 'snapshot' into askomics
danielfang97 Feb 3, 2025
3ddfd5d
Update docker-compose.yml
danielfang97 Feb 5, 2025
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2 changes: 1 addition & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ The base configuration, described with `docker-compose.yml`, is simply SynBioHub

To run the base configuration:
1. Open terminal
2. `git clone https://github.com/synbiohub/synbiohub2-docker`
2. `git clone -b snapshot https://github.com/synbiohub/synbiohub2-docker`
3. `docker-compose -f ./synbiohub2-docker/docker-compose.yml up`

### With Explorer
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10 changes: 8 additions & 2 deletions docker-compose.explorer.yml
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Expand Up @@ -3,22 +3,28 @@ version: '3.2'
services:
explorer:
image: myersresearchgroup/sbolexplorer:snapshot-synbiohub
privileged: true
ports:
- "13162:13162"
depends_on:
- elasticsearch
- synbiohub3
- synbiohub
- synbiohubFrontend
dns: 8.8.8.8
volumes:
- type: volume
source: explorer
target: /mnt
elasticsearch:
image: docker.elastic.co/elasticsearch/elasticsearch:6.3.2
depends_on:
- virtuoso
ports:
- "9200:9200"
volumes:
- esdata:/usr/share/elasticsearch/data
- type: volume
source: esdata
target: /usr/share/elasticsearch/data

volumes:
esdata:
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8 changes: 4 additions & 4 deletions docker-compose.yml
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Expand Up @@ -9,12 +9,12 @@ services:
volumes:
- /var/run/docker.sock:/var/run/docker.sock
virtuoso:
image: tenforce/virtuoso:virtuoso7.2.5
image: askomics/virtuoso:7.2.14
environment:
- VIRT_SPARQL_MaxQueryCostEstimationTime=default
- VIRT_SPARQL_MaxQueryExecutionTime=300
- VIRT_Parameters_ServerThreads=30
- VIRT_HTTPServer_ServerThreads=300
- VIRT_Parameters_ServerThreads=100
- VIRT_HTTPServer_ServerThreads=100
volumes:
- type: volume
source: virtuoso-db1
Expand All @@ -34,7 +34,7 @@ services:
- backend=http://localhost:7777
- backendSS=http://synbiohub:7777
synbiohub:
image: synbiohub/synbiohub:1.6.1-standalone
image: synbiohub/synbiohub:snapshot-standalone
depends_on:
- virtuoso
ports:
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