move testing script to extra

Author: ucabc46

extra/weak_scaling/kathleen_slurm_copy_states.sh

@@ -13,11 +13,11 @@ export JULIA_NUM_THREADS=$OMP_NUM_THREADS
 
 julia --project=. -e 'using Pkg; Pkg.instantiate(); Pkg.precompile()'
 
-PARTICLEDA_TEST_DIR=$HOME/ParticleDA.jl/test
-RESULTS_DIR=$PARTICLEDA_TEST_DIR/output
+PARTICLEDA_WEAKSCALING_DIR=$HOME/ParticleDA.jl/extra/weak_scaling
+RESULTS_DIR=$PARTICLEDA_WEAKSCALING_DIR/output
 mkdir -p $RESULTS_DIR
 JULIA_DIR=$HOME/.julia
 
 $JULIA_DIR/bin/mpiexecjl -n $SLURM_NNODES\
      julia --project=. \
-     $PARTICLEDA_TEST_DIR/mpi_optimized_copy_states.jl -t $RESULTS_DIR/all_timers_$SLURM_NNODES.h5 -o
+     $PARTICLEDA_TEST_DIR/optimized_copy_states.jl -t $RESULTS_DIR/all_timers_$SLURM_NNODES.h5 -o

test/mpi_optimized_copy_states.jl …ra/weak_scaling/optimized_copy_states.jltest/mpi_optimized_copy_states.jl renamed to extra/weak_scaling/optimized_copy_states.jl test/mpi_optimized_copy_states.jl renamed to extra/weak_scaling/optimized_copy_states.jl

@@ -1,23 +1,19 @@
 [deps]
 Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 ChunkSplitters = "ae650224-84b6-46f8-82ea-d812ca08434e"
-Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
 DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 GaussianRandomFields = "e4b2fa32-6e09-5554-b718-106ed5adafe9"
 HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
 OrdinaryDiffEqTsit5 = "b1df2697-797e-41e3-8120-5422d3b24e4a"
 PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
 YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
 
 [compat]

test/Project.toml

@@ -514,7 +514,7 @@ end
 end
 
 @testset "MPI test -- $(file)" for file in (
-    "mpi_filtering.jl", "mpi_copy_states.jl", "mpi_summary_statistics.jl", "mpi_optimized_copy_states.jl"
+    "mpi_filtering.jl", "mpi_copy_states.jl", "mpi_summary_statistics.jl"
 )
     julia = Base.julia_cmd()
     flags = ["--startup-file=no", "-q", "-t$(Base.Threads.nthreads())"]