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Pneumothorax pipeline#128

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Piotr1219 wants to merge 4 commits intomainfrom
123-pneumothorax
Open

Pneumothorax pipeline#128
Piotr1219 wants to merge 4 commits intomainfrom
123-pneumothorax

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@Piotr1219 Piotr1219 commented Jul 14, 2025

#123
Complete pipeline for pneumothorax dataset. Built completely using already available steps.
Tested locally using whole dataset.
Implemented automatic tests.


This pull request integrates the SIIM-ACR Pneumothorax dataset into the repository, enabling the processing of X-ray images for both classification and segmentation tasks.

The implementation includes:

  • Dataset Configuration: Added specific configuration parameters for the Pneumothorax dataset, including mapping for labels and segmentation masks compliant with the RadLex ontology.
  • Preprocessing Pipeline: Created a dedicated pipeline (PneumothoraxPipeline) to handle the ingestion, ID extraction, label assignment (based on filename analysis), and mask selection specific to this dataset's file structure.
  • Documentation: Updated the README.md to list the new dataset and provided instructions for downloading and configuring the source data paths.
  • Testing: Added a comprehensive test suite to verify that the pipeline executes correctly and produces the expected file tree, image content, and metadata (JSONL).
  • System Registration: Registered the new pipeline within the central runner configuration to make it executable within the framework.

@Piotr1219 Piotr1219 requested review from A-Huli and mickamin and removed request for A-Huli and mickamin July 14, 2025 17:31
@Piotr1219 Piotr1219 closed this Jul 14, 2025
@Piotr1219 Piotr1219 reopened this Jul 21, 2025
@Piotr1219 Piotr1219 requested review from A-Huli and mickamin July 21, 2025 14:19
@Piotr1219 Piotr1219 self-assigned this Jul 21, 2025
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kody-ai bot commented Feb 16, 2026

Kody Review Complete

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