🔖 Release 1.6.0#895

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shaneahmed merged 687 commits intomasterfrom

Dec 12, 2024

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Commits on Mar 10, 2023

:wrench: DEV: Filter Logger Output to `stdout` and `stderr` (#557)

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:heavy_minus_sign: DEP: Remove `tox` Dependency (#561)

shaneahmed
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John-P
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Commits on Mar 13, 2023

🚨 DEV: Use logger Instead Of print (slide_info.py) (#562)

shaneahmed
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adamshephard
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:art: ENH: Move `WSIReader` and `WSIMeta` import to top-level (#560)

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Commits on Mar 16, 2023

:memo: DOC: Improve Annotation Store Documentation + Fix Bug (#565)

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:bug: BUG: Fix Level When Using DICOM `read_region` (#564)

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Commits on Mar 20, 2023

🐛 BUG: Fix Docker Build for Ubuntu OS(s) (#569)
mostafajahanifar
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Commits on Mar 23, 2023

:memo: DOC: Improve Installation Instructions (#567)

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Commits on Mar 24, 2023

:art: Move Models to Top-Level Import (#574)

shaneahmed
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adamshephard
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Commits on Mar 27, 2023

🩹 BUG: Fix Parsing Missing Omero Version NGFF Metadata (#568)

John-P
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shaneahmed
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Commits on Mar 31, 2023

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➕ Add joblib as a dependency (#581)
shaneahmed
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📌 Pin Pandas Version to `>=2.0.0` (#583)

shaneahmed
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measty
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Commits on Apr 11, 2023

🚨 Use `logger` Instead Of `warnings` for `patchextraction.py` (#589)
shaneahmed
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Commits on Apr 12, 2023

✅ Add tests for lazy import (#591)
shaneahmed
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[skip ci] :bug: Fix Docstring and License Badge (#593)
shaneahmed
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✨ Feature Engine for Multi-Task Segmenter (#424)

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:pencil2: Fix Typo (#596)
blaginin
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:sparkles: ENH: Add Neighbourhood Querying Support To `AnnotationStore` (#540)

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Commits on May 8, 2023

:bug: Fix `pixman` incompatibility error on Colab (#601)
shaneahmed
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Commits on May 9, 2023

[skip ci] :adhesive_bandage: Update notebooks for Google Colab runs (#604)
shaneahmed
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Commits on May 19, 2023

:recycle: High Level `misc` functions Import (#606)
shaneahmed
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Commits on May 23, 2023

Update README.md (#613)
John-P
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✨ File Magic Detection & NGFF SQLite3 Support (#616)
John-P
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Commits on Jun 16, 2023

:recycle: Replace deprecated input `pretrained` with `weights` (#621)

shaneahmed
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measty
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[pre-commit.ci] pre-commit autoupdate (#515)

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:white_check_mark: Reduce run time for Mapde test (#627)
shaneahmed
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:memo: Fix docstrings (#624)

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[pre-commit.ci] pre-commit autoupdate (#642)
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:rotating_light: Fix linter errors in line with #625 (#647)

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:rotating_light: Add "NPY" `NumPy-specific rules` Checks (#654)
shaneahmed
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:rotating_light: Fix `ANN201` Errors in `tests` (#683)
shaneahmed
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:rotating_light: Add `flake8-boolean-trap` Checks (#686)
shaneahmed
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:rotating_light: Add `flake8-bandit` Checks (#687)
shaneahmed
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🚨 Fix `flake8-annotations` Checks in `models` (#702)
shaneahmed
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🚨 Add `flake8-annotations` to All Except `tiatoolbox/annotations` (#707)
shaneahmed
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:bug: Add `IOConfig` for NuClick in `pretrained_model.yaml` (#709)
mostafajahanifar
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[pre-commit.ci] pre-commit autoupdate (#714)
pre-commit-ci[bot]
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🚨 Fix `flake8-annotation` Linter Errors (#713)

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[pre-commit.ci] pre-commit autoupdate (#717)
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:arrow_up: Update torch dependency (#719)
shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#720)
pre-commit-ci[bot]
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Commits on Oct 13, 2023

❇️ Add Convert `patches` Output to `AnnotationStore` (#718)

measty
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shaneahmed
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Commits on Oct 19, 2023

:construction: Add Type Checking using `mypy` (#723)

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:hammer: Add `mypy` Checks to `exceptions.py` (#725)
shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#730)
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:recycle: Add typehints for dataset_abc.py (#726)

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:hammer: Add `typing.py` and `env_detection.py` to `mypy` Type Check (#731)

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[pre-commit.ci] pre-commit autoupdate (#741)
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:hammer: Add `utils/misc.py` to mypy (#744)

Jiaqi-Lv
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shaneahmed
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Commits on Nov 30, 2023

:pushpin: Update dependency link for pytorch cuda version (#746)
shaneahmed
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:bug: Return `masks` instead of `[mask]` (#748)
Abdol
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[pre-commit.ci] pre-commit autoupdate (#754)
pre-commit-ci[bot]
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:pushpin: Specify Python versions (#762)
shaneahmed
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🚑 Release 1.5.1 (#766)
shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#767)
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[pre-commit.ci] pre-commit autoupdate (#768)
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[pre-commit.ci] pre-commit autoupdate (#770)

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shaneahmed
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Commits on Jan 19, 2024

♻️ Remove `POWER` from sqlite-dist Calculations (#769)

measty
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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#774)
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[pre-commit.ci] pre-commit autoupdate (#784)
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:children_crossing: Handle Multidimensional `Features` in `WSIReader` (#742)

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Commits on Mar 7, 2024

Fix a typo in examples/README.md (#792)
moodyhunter
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[pre-commit.ci] pre-commit autoupdate (#794)

pre-commit-ci[bot]
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shaneahmed
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Commits on Mar 14, 2024

🐛 Fix `HoVer-Net` Class Output Information in `docs` (#751)

adamshephard
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shaneahmed
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🧑‍💻 Replace `black` with `ruff` Formatter (#797)
shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#798)

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shaneahmed
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Commits on Mar 20, 2024

:pushpin: Fix docs/requirements. (#799)
shaneahmed
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Commits on Mar 22, 2024

Add `mypy` Type Check to `wsi_registration.py` (#801)

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[pre-commit.ci] pre-commit autoupdate (#802)

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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#805)

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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#809)

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shaneahmed
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:bug: Fix `codecov` Reporting (#811)
shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#812)

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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#815)

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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#816)

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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#818)

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shaneahmed
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:pushpin: Update `ruff` version. (#821)
shaneahmed
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Add `mypy` type check to `annotation/` (#806)

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[pre-commit.ci] pre-commit autoupdate (#823)

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shaneahmed
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[skip ci] :memo: Enhance download paths in 10-wsi-registration.ipynb (#828)
shaneahmed
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📌 Fix Compatibility with `bokeh` Version `3.5.0` (#832)

measty
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shaneahmed
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[pre-commit.ci] pre-commit autoupdate (#833)

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shaneahmed
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Commits on Jul 12, 2024

🐛 Add `mypy` Type Check `tools/wsi_registration.py` (#831)
Jiaqi-Lv
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[pre-commit.ci] pre-commit autoupdate (#835)

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shaneahmed
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Commits on Aug 9, 2024

[pre-commit.ci] pre-commit autoupdate (#838)

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🧑‍💻 Fix `mypy` Type Error in `tiatoolbox/tools` (#842)
Jiaqi-Lv
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[pre-commit.ci] pre-commit autoupdate (#847)

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shaneahmed
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Commits on Aug 23, 2024

🐛 Fix Immutable Output from `WSIReader` (#850)
mostafajahanifar
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[pre-commit.ci] pre-commit autoupdate (#851)

pre-commit-ci[bot]
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shaneahmed
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:hammer: Update test build for `Ubuntu-24.04` (#862)
shaneahmed
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:pushpin: Pin `numpy<2.0.0` (#876)
shaneahmed
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🐛 Add Warning for `VahadaneExtractor` Algorithm Instability (#871)

mostafajahanifar
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pre-commit-ci[bot]
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♻️ Update Changes from New Engine Design (#882)
shaneahmed
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[skip ci] :pencil2: Fix typo in docstring.
shaneahmed
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Commits on Dec 12, 2024