v0.2.3

• Added SIMD optimizations to TALCO-XDrop.cpp for faster execution (only on x86_64/amd64)
• Improved the speed of progressive alignment
• Added support for BLOSUM45 and BLOSUM80 scoring matrices for protein alignment
• Cleaned up and reorganized the codebase
• Fixed bugs present in TWILIGHT v0.2.2

v0.2.2

• Improved write speed for compressed output files.
• Fixed several bugs present in TWILIGHT v0.2.1.

v0.2.1

• Added support for writing compressed output files (.gz).
• Fixed several bugs present in TWILIGHT v0.2.0.

v0.2.0

• Added support for adding new sequences into an existing alignment.
• Updated the Snakemake workflow to enable faster Iterative Mode and allow adding new sequences without requiring a placement tree.
• Added support for using a tree that contains more sequences than the actual dataset.
• Fixed several CUDA-related issues present in TWILIGHT v0.1.4.

v0.1.4a

• Fixed an issue when running the TWILIGHT downloaded from Conda on CPU-only platforms

v0.1.4

• Fixed bugs related to protein sequence alignment
• Added support for protein alignment in the iterative mode
• Introduced semi-global alignment for handling large differences in sequence lengths
• Updated default parameters for improved performance and accuracy

v0.1.3

• Fixed bugs related to adding deferred sequence from the previous release
• Added support for AMD GPUs and macOS platforms
• Introduced experimental support for protein alignment (still under optimization)
• Updated build scripts for improved compatibility and setup

v0.1.2

• Fixed an issue where the printed version did not match the actual release version.
• Introduced command-line options to configure thresholds for filtering non-conforming sequences.
• Added an option to control whether non-conforming sequences should be excluded.
• Added Conda installation instructions to the README.

v0.1.1

• Merged experiment/sars branch to the main branch

Initial release

v0.1.0

add version