Add comprehensive documentation for Chains object internal fields #486
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MCMCChains.jl documentation for PR #486 is available at: |
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This PR addresses the lack of documentation for internal fields in
Chainsobjects returned by NUTS and other HMC samplers. Previously, users could see fields likeacceptance_rate,hamiltonian_energy,tree_depth, etc., but had no explanation of what these fields represented or how to use them.Changes Made
Added a comprehensive "Internals Fields" section to
docs/src/chains.mdthat documents:12 common internal fields including all those mentioned in the original issue:
acceptance_rate: The acceptance rate of the samplerhamiltonian_energy: Total energy used for diagnostic plotshamiltonian_energy_error: Energy integration errorsis_accept: Whether samples were acceptedlog_densityandlp: Log probability density valuesn_steps: Number of leapfrog steps takenstep_size: Integrator step sizetree_depth: NUTS binary tree depthPractical code examples showing how to access internal fields:
Diagnostic applications explaining how these fields are used for:
energyplot()Example Usage
Before this PR, users saw output like:
But had no way to understand what these fields meant. Now the documentation provides clear explanations and usage examples for each field.
Fixes #339.
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