Documentation and Turing Navigation CI improvement #45
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CI failure is unrelated, I suppose it's just because the repo hasn't been maintained 🤷♀️ |
penelopeysm
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Feb 9, 2025
sunxd3
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Mar 11, 2025
* Update CI.yml * Create Docs.yml * Update DocNav.yml * No need of deploydocs() after using new Docs & DocsNav workflows
yebai
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Mar 20, 2025
* added CUDA extension * fixed merge issue * rm extra weakdeps * edit toml * @require cuda ext * minor update tests * try to fix ambiguity * rm tmp test file * wip on randdevice interface * move cuda part in ext * rename sampler.jl to sample.jl * update objectives/elbo.jl to use rand_device * update test/cuda.jl * rm exmaple/test.jl * fix CI test error * fix CI error * update flux compat for test/ * rm tmp test file * fix cuda err diffresults.gradient_result * Documentation (#27) * add NF intro * set up doc files * add gitignore * minor update to readme * update home page * update docs for each funciton * update docs * src * update function docs * update docs * fix readme math rendering issue * update docs * update example doc * update customize layer docs * finish docs * finish docs * Update README.md Co-authored-by: Cameron Pfiffer <[email protected]> * Update README.md Co-authored-by: Cameron Pfiffer <[email protected]> * Update README.md Co-authored-by: Cameron Pfiffer <[email protected]> * Update docs/src/index.md Co-authored-by: Xianda Sun <[email protected]> * Update README.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/index.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/index.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/index.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/index.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/example.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * Update docs/src/customized_layer.md Co-authored-by: Xianda Sun <[email protected]> * minor ed * minor ed to fix latex issue * minor update --------- Co-authored-by: Cameron Pfiffer <[email protected]> Co-authored-by: Xianda Sun <[email protected]> * add more synthetic targets (#20) * add Neal's Funnel and Warped Gaussian * fixed bug in warped gaussian * add reference for warped Gauss * add Cross dsitribution * udpate docs for cross * Update example/targets/cross.jl change comment into docs Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update example/targets/cross.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * update cross docs * minor ed * Update example/targets/neal_funnel.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update example/targets/neal_funnel.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * doc banana using * fixing docs with latex * baanan docs with latex * add NF quick intro * Revert "add NF quick intro" This reverts commit e399274. * rm unnecesary code for cross * rm example/manifest * Update example/targets/neal_funnel.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update example/targets/cross.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * Update example/targets/cross.jl Co-authored-by: Tor Erlend Fjelde <[email protected]> * minor update to cross docs --------- Co-authored-by: Tor Erlend Fjelde <[email protected]> * Fix math display errors in readme (#28) * fix readme math err * minor update readme * add PR links to TODO * CompatHelper: bump compat for Optimisers to 0.3, (keep existing compat) (#29) * CompatHelper: bump compat for Optimisers to 0.3, (keep existing compat) * bump version to 0.1.1 --------- Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: Zuheng <[email protected]> * CompatHelper: bump compat for ADTypes to 0.2, (keep existing compat) (#31) Co-authored-by: CompatHelper Julia <[email protected]> * CompatHelper: bump compat for ADTypes to 1, (keep existing compat) (#32) Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: Hong Ge <[email protected]> * CompatHelper: bump compat for Enzyme in [weakdeps] to 0.12, (keep existing compat) (#34) Co-authored-by: CompatHelper Julia <[email protected]> * fix doc build failure (#35) * minor doc dep update * rm unnecessary dep * add distributions random linearalgebra to docs env * Create DocNav.yml * CompatHelper: bump compat for Bijectors to 0.14, (keep existing compat) (#41) Co-authored-by: CompatHelper Julia <[email protected]> * Documentation and Turing Navigation CI improvement (#45) * Update CI.yml * Create Docs.yml * Update DocNav.yml * No need of deploydocs() after using new Docs & DocsNav workflows * CompatHelper: bump compat for Enzyme in [weakdeps] to 0.13, (keep existing compat) (#39) Co-authored-by: CompatHelper Julia <[email protected]> * Change to DifferentiationInterface (#46) * switch to differentiationinterface from diffresults * rename train.jl to optimize.jl * fix some compat issue and bump version * update tests to new interface * add Moonkcake to extras * rm all ext for now * rm enzyme test, and import mooncake for test * fixing compat and test with mooncake * fixing test bug * fix _value_and_grad wrapper bug * fix AutoReverseDiff argument typo * minor ed * minor ed * fixing test * minor ed * rm test for mooncake * fix doc * chagne CI * update CI * streamline project toml * Apply suggestions from code review Co-authored-by: David Widmann <[email protected]> * add enzyme to tests * add Enzyme to using list * fixing enzyme readonly error by wrapping loss in Const * mv enzyme related edits to ext/ and fix tests * fixing extension loading error * Update Project.toml Co-authored-by: Guillaume Dalle <[email protected]> * remove Requires Co-authored-by: Guillaume Dalle <[email protected]> * remove explit load ext Co-authored-by: Guillaume Dalle <[email protected]> * Update src/objectives/loglikelihood.jl Co-authored-by: Guillaume Dalle <[email protected]> * make ext dep explicit * rm empty argument specialization for _prep_grad and _value_grad * signal empty rng arg * drop Requires * drop Requires * update test to include mooncake * rm unnecessary EnzymeCoreExt * minor update of readme * typo fix in readme * Update src/NormalizingFlows.jl Co-authored-by: David Widmann <[email protected]> * Update src/NormalizingFlows.jl Co-authored-by: David Widmann <[email protected]> * rm time_elapsed from train_flow * Update docs/src/api.md Co-authored-by: David Widmann <[email protected]> --------- Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: David Widmann <[email protected]> Co-authored-by: Guillaume Dalle <[email protected]> * add CUDA extension * undo change * add CUDA to test dep * add `rand_device` in main package * fix test error * move CUDA test to separate folder for gpu testing * add some preliminary gpu test CI code * remove cuda.jl from testing * update gpu test pipeline setup * update test file path * try fix error in CI setup * move files * try to debug * fix error * fix cuda testing project.toml * cosmetic fixed -- resolve linter complaints * fix test error * clean up * fix more errors * try to fix test error * add back allowscalar * refactoring * try fixing doc error * try fix doc again * add ref link --------- Co-authored-by: Zuheng <[email protected]> Co-authored-by: David Xu <[email protected]> Co-authored-by: Cameron Pfiffer <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: CompatHelper Julia <[email protected]> Co-authored-by: Hong Ge <[email protected]> Co-authored-by: Shravan Goswami <[email protected]> Co-authored-by: Xianda Sun <[email protected]> Co-authored-by: David Widmann <[email protected]> Co-authored-by: Guillaume Dalle <[email protected]>
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Reference: TuringLang/actions#12