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thewati Dec 9, 2025
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thewati Dec 9, 2025
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thewati Dec 28, 2025
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thewati Jan 12, 2026
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thewati Jan 27, 2026
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thewati Feb 3, 2026
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thewati Feb 4, 2026
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thewati Feb 9, 2026
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thewati Feb 11, 2026
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thewati Feb 12, 2026
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thewati Feb 16, 2026
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thewati Feb 19, 2026
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thewati Feb 25, 2026
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thewati Mar 11, 2026
7d92e23
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thewati Mar 12, 2026
456de5f
date_onset for conditions
thewati Mar 19, 2026
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thewati Mar 19, 2026
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Merge branch 'master' into wati/onset_in_cmd_module
thewati Mar 19, 2026
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ruff
thewati Mar 19, 2026
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thewati Mar 30, 2026
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Merge branch 'master' into wati/onset_in_cmd_module
thewati Mar 31, 2026
a8efe7e
Use dictionary
thewati Mar 31, 2026
f119042
fix instance
thewati Mar 31, 2026
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9 changes: 9 additions & 0 deletions src/tlo/methods/cardio_metabolic_disorders.py
Original file line number Diff line number Diff line change
Expand Up @@ -301,6 +301,9 @@ def __init__(self, name=None, do_log_df: bool = False, do_condition_combos: bool
self.lms_event_death = dict()
self.lms_event_symptoms = dict()

# Dictionary to hold date onset
self.diabetes_onset_dates = {}

def read_parameters(self, resourcefilepath: Optional[Path] = None):
"""Read parameter values from files for condition onset, removal, deaths, and initial prevalence.

Expand Down Expand Up @@ -1058,6 +1061,12 @@ def schedule_death_to_occur_before_next_poll(p_id, cond):
idx_acquires_condition = acquires_condition[acquires_condition].index
df.loc[idx_acquires_condition, f'nc_{condition}'] = True

# Store onset dates only for diabetes
if condition == 'nc_diabetes':
for person_id in idx_acquires_condition:
if person_id not in self.module.diabetes_onset_dates:
self.module.diabetes_onset_dates[person_id] = self.sim.date

# Add incident cases to the tracker
self.module.trackers['onset_condition'].add(
condition, df.loc[idx_acquires_condition].groupby('age_range').size().to_dict()
Expand Down
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