Skip to content

Changes to Dockerfile #2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
PeterSomkuti wants to merge 2 commits into
base: julia/retrievaltoolkit-docker
Choose a base branch
from
Open

Changes to Dockerfile #2

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
6b40a7b
Change in Dockerfile to fix build locations.
May 15, 2025
e4cd814
Added AWS and AWSS3, disable download buttons.
May 15, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 7 additions & 3 deletions Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,16 +5,17 @@ FROM quay.io/jupyter/julia-notebook:latest
## Install Dependencies
#RUN apt update && apt install -y flex gfortran build-essential libopenblas-dev liblapack-dev

#USER jovyan
USER jovyan
## Env Variables
ENV JULIA_NUM_THREADS=3
ENV OMP_NUM_THREADS=1
ENV XRTM_PATH=/home/jovyan/xrtm

RUN conda install -y conda-forge::make flex gfortran gxx libopenblas binutils patch

RUN git clone https://github.com/gmcgarragh/bindx2 bindx2 && cd bindx2 \
&& cp make.inc.example make.inc && make

#RUN git clone https://github.com/gmcgarragh/xrtm.git xrtm && cd xrtm \
# && cp make.inc.example make.inc && make

Expand All @@ -29,7 +30,10 @@ RUN cd xrtm && make; exit 0


#### Install Julia Packages
RUN julia -e 'using Pkg; Pkg.add(["Plots", "LaTeXStrings", "ArgParse", "Dates", "DocStringExtensions", "HDF5", "Interpolations", "LinearAlgebra", "Logging", "LoopVectorization", "Printf", "ProgressMeter", "Statistics", "StatsBase", "Unitful"])'
RUN julia -e 'using Pkg; Pkg.add(["Plots", "LaTeXStrings", "ArgParse", "Dates", "DocStringExtensions", "HDF5", "Interpolations", "LinearAlgebra", "Logging", "LoopVectorization", "Printf", "ProgressMeter", "Statistics", "StatsBase", "Unitful", "AWS", "AWSS3"]); Pkg.precompile()'

# Deactivate "download" button
RUN jupyter-labextension disable @jupyterlab/docmanager-extension:download && jupyter-labextension disable @jupyterlab/filebrowser-extension:download && jupyter-labextension lock

# todo: switch to use toml file with julia
#RUN git clone https://github.com/US-GHG-Center/RetrievalToolbox.jl && \
Expand Down