Merge pull request #1 from jbkinney/patch-1

Minor edits to 2010 entries

Author: afrubin

README.md

@@ -18,7 +18,7 @@ You can also submit changes using the GitHub issue tracker.
 |PMID|DOI|First author|Year|Type|Molecule|Model|Selection Type|Mutagenesis Type|Sequencing Platform|Raw Data|Scores in Table|
 |---|---|---|---|---|---|---|---|---|---|---|---|
 |[19915551](https://www.ncbi.nlm.nih.gov/pubmed/19915551)|[10.1038/nbt.1589](https://doi.org/10.1038/nbt.1589)|Patwardhan|2009|MPRA|T3 promoter, T7 promoter, SP6 promoter, CMV promoter, HBB promoter, S100A4 promoter|in vitro|Transcription|microarray synthesis|Illumina|[SRP001721](https://www.ebi.ac.uk/ena/data/view/SRP001721)|TXT|
-|[20439748](https://www.ncbi.nlm.nih.gov/pubmed/20439748)|[10.1073/pnas.1004290107](https://doi.org/10.1073/pnas.1004290107)|Kinney|2010|MPRA|lac promoter|E.coli|FACS|Cassette ligation|Roche 454|[SRA012345](https://www.ebi.ac.uk/ena/data/view/SRA012345)|No|
+|[20439748](https://www.ncbi.nlm.nih.gov/pubmed/20439748)|[10.1073/pnas.1004290107](https://doi.org/10.1073/pnas.1004290107)|Kinney|2010|MPRA|lac promoter|E.coli|FACS|doped oligo synthesis|Roche 454|[SRA012345](https://www.ebi.ac.uk/ena/data/view/SRA012345)|No|
 |[20711194](https://www.ncbi.nlm.nih.gov/pubmed/20711194)|[10.1038/nmeth.1492](https://doi.org/10.1038/nmeth.1492)|Fowler|2010|DMS|WW domain|Phage|Binding|doped oligo synthesis|Illumina|[SRP002725](https://www.ebi.ac.uk/ena/data/view/SRP002725)|No|
 |[20714644](https://www.ncbi.nlm.nih.gov/pubmed/20714644)|[10.1039/c0mb00061b](https://doi.org/10.1039/c0mb00061b)|Ernst|2010|DMS|Synthetic PDZ domain|Phage|Binding|Kunkel|Roche 454|No|No|
 |[21464309](https://www.ncbi.nlm.nih.gov/pubmed/21464309)|[10.1073/pnas.1016024108](https://doi.org/10.1073/pnas.1016024108)|Hietpas|2011|DMS|Hsp90|Yeast|Growth|NNN PCR|Illumina|No|TXT|
@@ -33,7 +33,7 @@ You can also submit changes using the GitHub issue tracker.
 |[23017428](https://www.ncbi.nlm.nih.gov/pubmed/23017428)|[10.1016/j.jmb.2012.09.014](https://doi.org/10.1016/j.jmb.2012.09.014)|Deng|2012|DMS|TEM1 Beta-lactamase|E.coli|Amp resistance|NNS Kunkel|Roche 454|No|XLS|
 |[23035249](https://www.ncbi.nlm.nih.gov/pubmed/23035249)|[10.1073/pnas.1209751109](https://doi.org/10.1073/pnas.1209751109)|Araya|2012|DMS|WW domain|Phage|Binding|doped oligo synthesis|Illumina|Yes|No|
 |[23041932](https://www.ncbi.nlm.nih.gov/pubmed/23041932)|[10.1038/nature11500](https://doi.org/10.1038/nature11500)|McLaughlin|2012|DMS|PSD95 PDZ|Bacteria|Special|NNS PCR|Illumina|No|No|
-|[23103372](https://www.ncbi.nlm.nih.gov/pubmed/23103372)|[10.1016/j.bbrc.2012.10.066](https://doi.org/10.1016/j.bbrc.2012.10.066)|Fujino|2012|DMS|Fab antibody fragment|in vitro|Ribodisplay|PCR with “fragments”|Roche 454|No|No|
+|[23103372](https://www.ncbi.nlm.nih.gov/pubmed/23103372)|[10.1016/j.bbrc.2012.10.066](https://doi.org/10.1016/j.bbrc.2012.10.066)|Fujino|2012|DMS|Fab antibody fragment|in vitro|Ribodisplay|PCR with “fragments”|Roche 454|No|No|
 |[23152521](https://www.ncbi.nlm.nih.gov/pubmed/23152521)|[10.1128/JVI.01658-12](https://doi.org/10.1128/JVI.01658-12)|Wu|2012|DMS|Neuraminidase|Human/H1N1|Oseltamivir resistance|error prone pcr|Roche 454|No|No|
 |[23241746](https://www.ncbi.nlm.nih.gov/pubmed/23241746)|[10.1101/gr.144659.112](https://doi.org/10.1101/gr.144659.112)|Liachko|2012|MPRA|Autonomously replicating sequences|Yeast|Growth|doped oligo synthesis|Illumina|[SRA051406](https://www.ebi.ac.uk/ena/data/view/SRA051406)|No|
 |[23287719](https://www.ncbi.nlm.nih.gov/pubmed/23287719)|[10.1126/science.1230161](https://doi.org/10.1126/science.1230161)|Ernst|2013|DMS|Ubiquitin|Phage|Binding|site-directed mutagenesis with doped oligos|ELISA|No|No|
@@ -78,7 +78,7 @@ You can also submit changes using the GitHub issue tracker.
 |[25657251](https://www.ncbi.nlm.nih.gov/pubmed/25657251)|[10.1126/science.1257360](https://doi.org/10.1126/science.1257360)|Podgornaia|2015|DMS|PhoQ|Bacteria|FACS|NNS PCR|Illumina|No|No|
 |[25723163](https://www.ncbi.nlm.nih.gov/pubmed/25723163)|[10.1016/j.cell.2015.01.035](https://doi.org/10.1016/j.cell.2015.01.035)|Stiffler|2016|DMS|TEM1 B-lactamase|E.coli|Growth|NNS PCR|Illumina|No|XLS|
 |[25823446](https://www.ncbi.nlm.nih.gov/pubmed/25823446)|[10.1534/genetics.115.175802](https://doi.org/10.1534/genetics.115.175802)|Starita|2015|DMS|BRCA1|Yeast, Phage|Growth, Binding|microarray synthesis|Illumina (barcoded and subassembly)|No|XLS|
-|[25875337](https://www.ncbi.nlm.nih.gov/pubmed/25875337)|[10.1371/journal.pgen.1005147](https://doi.org/10.1371/journal.pgen.1005147)|Shalem|2015|MPRA|3’ UTR|Yeast|Fluorescence, Transcription|microarray synthesis|Illumina|No|XLS|
+|[25875337](https://www.ncbi.nlm.nih.gov/pubmed/25875337)|[10.1371/journal.pgen.1005147](https://doi.org/10.1371/journal.pgen.1005147)|Shalem|2015|MPRA|3’ UTR|Yeast|Fluorescence, Transcription|microarray synthesis|Illumina|No|XLS|
 |[26040002](https://www.ncbi.nlm.nih.gov/pubmed/26040002)|[10.1073/pnas.1422285112](https://doi.org/10.1073/pnas.1422285112)|Romero|2015|DMS|Bgl2|Bacteria/microfluidic droplets|Activity|error-prone PCR|Illumina|No|No|
 |[26132554](https://www.ncbi.nlm.nih.gov/pubmed/26132554)|[10.1371/journal.pgen.1005310](https://doi.org/10.1371/journal.pgen.1005310)|Wu|2015|DMS|Polymerase PA|Influenza|Growth|error-prone PCR|Illumina|[PRJNA254185](https://www.ebi.ac.uk/ena/data/view/PRJNA254185)|XLS|
 |[26170332](https://www.ncbi.nlm.nih.gov/pubmed/26170332)|[10.1073/pnas.1511328112](https://doi.org/10.1073/pnas.1511328112)|Kretz|2015|DMS|VWF|Phage|Binding/cleavage|doped oligo synthesis|Illumina|No|XLS|
@@ -179,7 +179,7 @@ You can also submit changes using the GitHub issue tracker.
 |[30778069](https://www.ncbi.nlm.nih.gov/pubmed/30778069)|[10.1038/s41467-019-08777-y](https://doi.org/10.1038/s41467-019-08777-y)|Michaels|2019|MPRA|microRNA|HEK293T|polysome profiling|degenerate oligos|Illumina|[PRJNA516224](https://www.ebi.ac.uk/ena/data/view/PRJNA516224)|No|
 |[30936490](https://www.ncbi.nlm.nih.gov/pubmed/30936490)|[10.1038/s41564-019-0412-y](https://doi.org/10.1038/s41564-019-0412-y)|Noda-Garcia|2019|DMS|GDH|Bacteria|Growth|NNS PCR|Illumina|No|XLS|
 |[30956043](https://www.ncbi.nlm.nih.gov/pubmed/30956043)|[10.1016/j.molcel.2019.02.003](https://doi.org/10.1016/j.molcel.2019.02.003)|Ahler|2019|DMS|Src|Yeast|Growth|NNK PCR|Illumina (barcoded and subassembly)|GSE114098|XLS|
-|[31267113](https://www.ncbi.nlm.nih.gov/pubmed/31267113)|[10.1038/s41587-019-0164-5](https://doi.org/10.1038/s41587-019-0164-5)|Sample|2019|MPRA|5’ UTR|human cells|polysome profiling|random bases|Illumina|GSE114002|No|
+|[31267113](https://www.ncbi.nlm.nih.gov/pubmed/31267113)|[10.1038/s41587-019-0164-5](https://doi.org/10.1038/s41587-019-0164-5)|Sample|2019|MPRA|5’ UTR|human cells|polysome profiling|random bases|Illumina|GSE114002|No|
 |[31395865](https://www.ncbi.nlm.nih.gov/pubmed/31395865)|[10.1038/s41467-019-11526-w](https://doi.org/10.1038/s41467-019-11526-w)|Kircher|2019|MPRA|Multiple mammalian promoters and enhancers|multiple cell lines|Transcription|error-prone PCR|Illumina|GSE126550 |TXT|
 |[31697803](https://www.ncbi.nlm.nih.gov/pubmed/31697803)|[10.1182/blood.2019002561  ](https://doi.org/10.1182/blood.2019002561  )|Bridgford|2020|DMS|MPL|Ba/F3 cells|Growth|NNN PCR|Illlumina|[SRR10193506](https://www.ebi.ac.uk/ena/data/view/SRR10193506)|TXT|
 |[32385156](https://www.ncbi.nlm.nih.gov/pubmed/32385156)|[10.1073/pnas.1918680117 ](https://doi.org/10.1073/pnas.1918680117 )|Mehlhoff|2020|DMS|TEM-1 BL|E.coli|Growth|NNN PCR|Illlumina|PRJNA565437 |XLS|