Refactor Score Ranges to Score Calibrations and Strengthen Their Data Model#545

Merged

bencap merged 20 commits intorelease-2025.5.0from

feature/bencap/518/generic-score-range-entries

Nov 11, 2025

Commits on Oct 6, 2025

Add primary field to score range models and implement validation for single primary definition
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Add Fayer score range models and integrate into score set ranges
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Commits on Oct 8, 2025

Commits on Nov 10, 2025

feat: make calibration migration manual
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feat: drop score range property from score set table
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feat: remove score_ranges column from ScoreSet model
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feat: add test constants for biorxiv publication, oddspaths, evidence strengths, and reworked score calibrations
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feat: add ACMG classification models and associated tests
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feat: add odds ratio classification function and corresponding tests
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feat: refactor score ranges into score calibrations.
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feat: remove 'name' field and add 'notes' field to score calibrations
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feat: add score calibration model to /permissions router
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feat: filter score calibrations by user permissions in fetch_score_set_by_urn
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Adds various small patches to new score calibration model
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feat: allow 'not_specified' classifications to overlap in score calibration ranges
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fix: correct typo in StrengthOfEvidenceProvided enum value and update related test
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feat: add script to load calibration data from CSV into the database
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Commits on Nov 11, 2025