feat: output VRS digest with post mapped HGVS strings #577
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This pull request adds support for extracting and exporting the VRS digest from post-mapped variant objects. The main changes involve updating the CSV export logic to include the digest, implementing the extraction function, and ensuring robust test coverage.
VRS Digest Extraction and Export:
get_digest_from_post_mappedinmavedb.lib.variantsto extract thedigestfield from post-mapped VRS objects.get_score_set_variants_as_csvandvariant_to_csv_rowinmavedb.lib.score_setsto include thepost_mapped_vrs_digestcolumn in exports when post-mapped HGVS columns are included. [1] [2]Testing Improvements:
get_digest_from_post_mappedto verify correct extraction behavior for various input scenarios intests/lib/test_variants.py.Codebase Cleanup and Imports:
mavedb.lib.score_setsandmavedb.lib.variants. [1] [2] [3]tests/lib/test_variants.pyto include the new function and improve readability. [1] [2]