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Copilotkjy5
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Clarify reference coordinate reset behavior when connecting manipulators (#127)
* Initial plan * Update ephys link mirror probe instructions with reference coordinate info Co-authored-by: kjy5 <[email protected]> --------- Co-authored-by: copilot-swe-agent[bot] <[email protected]> Co-authored-by: kjy5 <[email protected]>
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source/pinpoint/tutorials/tutorial_ephys_link.md

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@@ -132,11 +132,11 @@ stop button feature.
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more information.](sensapex-handedness)
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5. Use the dropdown to select a probe to link to this manipulator. Probes are
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identified by their unique ID (UUID) and their color in the scene.
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6. Upon connection, the probe's stereotaxic position will be used as the zero
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coordinate that all movements will be relative to. This zero coordinate can
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be edited manually through the text boxes or by clicking the home button
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(label 6.1) to re-read the manipulator's position and reset the probe in
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Pinpoint.
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6. Upon connection, the manipulator will set the default reference coordinate to
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0,0,0, so the probe may look like it moved away from your expected location.
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You can manually set the reference coordinate through the text boxes, or you
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can touch the _in vivo_ probe to bregma and use the home button (label 6.1)
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to re-read the manipulator's position and sync the reference coordinate.
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1. For Sensapex manipulator users, you may zero out the manipulator's
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position on the touch screen controller. The values there will not affect
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Pinpoint.

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