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fix label image dimension mis match #12

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fix label image dimension mis match #12

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c90e3f0
fix label image dimension mis match
MikeLippincott Jan 25, 2025
a443cda
generate test
MikeLippincott Jan 30, 2025
7d89338
testing
MikeLippincott Jan 30, 2025
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3 changes: 3 additions & 0 deletions src/nviz/image.py
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Original file line number Diff line number Diff line change
Expand Up @@ -280,12 +280,15 @@ def tiff_to_ometiff( # noqa: PLR0913

# Collect image data
for channel, stack in frame_zstacks["images"].items():
raw_image_dim = len(stack.shape)
images_data.append(stack)
channel_names.append(channel)

# Collect label data
if label_dir:
for compartment_name, stack in frame_zstacks["labels"].items():
if len(stack.shape) != raw_image_dim and len(stack.shape) == 3:
labels_data.append(np.expand_dims(stack, axis=0))
labels_data.append(stack)
label_names.append(f"{compartment_name} (labels)")

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