Skip to content

Conversation

@jenna-tomkinson
Copy link
Member

Add heatmap analysis for EDA

In this PR, heatmaps for correlation and features are added at the bulk and single-cell level (only for correlation) to evaluate any heterogeneity.

@review-notebook-app
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

Copy link

@wli51 wli51 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Great job! PR LGTM. I think there might be a pathing bug in 4.EDA/nbconverted/4.correlation_heatmaps.py. Other than that I only have minor suggestions for stricter scaling/correlation guardrails and potential refactor as reusable functions.

@jenna-tomkinson
Copy link
Member Author

@wli51 thank you for the review! I am merging now! :)

@jenna-tomkinson jenna-tomkinson merged commit 0eb2611 into WayScience:main Jan 6, 2026
@jenna-tomkinson jenna-tomkinson deleted the add_heatmaps branch January 6, 2026 21:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants