Pre-processed data

All pre-processed data are available here in the form of readily-for-analysis for researchers to develop new methods.

• human_cell_atlas.7z contains 198 csv files involving 562,977 cells and 56 tissues from HCL
• mouse_cell_atlas.7z contains 126 csv files involving 201,764 cells and 32 tissues from MCA
• human_test_data.7z contains 54 csv files involving 130,885 cells and 10 tissues.
• mouse_test_data.7z contains 128 csv files involving 134,604 cells and 12 tissues.

Note

Each dataset contains two csv files.

• _data.csv file contains single-cell gene expression data matrix, wherein the first column represents gene names and the first row represents cell id.
• _celltype.csv file contains cell type information for each cell, wherein the first column represents cell id and the second column represents the cell type.