Test and Update Integration and Deployment Configuration #121

codegen-sh · 2025-05-17T07:55:13Z

Overview

This PR addresses the Integration and Deployment module improvements for the Codegen SDK as outlined in ZAM-416.

Changes

1. Updated Python Dependencies

Added version constraints to previously unconstrained dependencies
Updated dependencies to latest secure versions
Removed strict pinning from some dependencies to allow security updates
Added comments to explain significant changes

2. Improved Dockerfile

Enhanced layer caching with better organization
Reduced image size by cleaning up apt caches
Improved readability with better comments and formatting
Combined RUN commands to reduce layers

3. Enhanced GitHub Actions Workflows

Added configurable UV version parameter to setup-environment action
Increased timeouts for tests to improve reliability
Added caching for cibuildwheel to speed up builds
Added retention period for artifacts

4. Updated Setup and Installation Scripts

Added error handling with set -e
Added UV installation check and auto-install
Improved virtual environment setup
Added success messages

5. Improved Dependency Installation

Enhanced OS detection for different platforms
Added support for macOS and Fedora/RHEL/CentOS
Added more detailed error messages
Added installation of additional dependencies

Testing

The changes have been tested by:

Validating the updated dependencies for compatibility
Checking the Dockerfile builds successfully
Verifying the GitHub Actions workflows syntax
Testing the setup and installation scripts on different environments

Related Issues

Resolves ZAM-416
Part of ZAM-408

💻 View my work • About Codegen

Summary by Sourcery

Update integration and deployment configuration by constraining and updating dependencies, optimizing container builds, enhancing CI workflows, and refining setup and install scripts.

Enhancements:

Add error handling, OS detection, and cross-platform support in install-deps.sh
Enhance setup.sh to auto-install UV, create virtual environment, sync dependencies, and install pre-commit hooks

Build:

Constrain and update Python dependencies in pyproject.toml to latest secure versions and remove strict pinnings
Optimize Dockerfile with improved layer caching, consolidated RUN commands, and apt cache cleanup

CI:

Add configurable Python and UV versions to setup-environment action
Increase job timeouts and add caching for test pipelines and cibuildwheel
Enable UV cache in release workflow and set artifact retention periods

# Motivation The **Codegen on OSS** package provides a pipeline that: - **Collects repository URLs** from different sources (e.g., CSV files or GitHub searches). - **Parses repositories** using the codegen tool. - **Profiles performance** and logs metrics for each parsing run. - **Logs errors** to help pinpoint parsing failures or performance bottlenecks.  # Content  see [codegen-on-oss/README.md](https://github.com/codegen-sh/codegen-sdk/blob/acfe3dc07b65670af33b977fa1e7bc8627fd714e/codegen-on-oss/README.md) # Testing  `uv run modal run modal_run.py` No unit tests yet 😿 # Please check the following before marking your PR as ready for review - [ ] I have added tests for my changes - [x] I have updated the documentation or added new documentation as needed

…napshots

Original commit by Tawsif Kamal: Revert "Revert "Adding Schema for Tool Outputs"" (codegen-sh#894) Reverts codegen-sh#892 --------- Co-authored-by: Rushil Patel <rpatel@codegen.com> Co-authored-by: rushilpatel0 <171610820+rushilpatel0@users.noreply.github.com>

Original commit by Ellen Agarwal: fix: Workaround for relace not adding newlines (codegen-sh#907)

…on-files

…elop

- Updated Python dependencies with security fixes and version constraints - Improved Dockerfile with better caching and layer optimization - Enhanced GitHub Actions workflows with better timeouts and caching - Updated setup and installation scripts for better reliability - Added error handling and OS detection to dependency installation

sourcery-ai · 2025-05-17T07:55:18Z

Reviewer's Guide

This PR strengthens the Integration and Deployment configuration by locking and updating Python dependencies, refactoring the Dockerfile for smaller, cache-friendly builds, extending and parameterizing CI workflows with improved caching and timeouts, and hardening installation scripts with robust error handling and broader OS support.

File-Level Changes

Change	Details	Files
Enhanced Python dependency constraints and updates	Added version bounds to previously unconstrained packages Bumped select dependencies to secure versions Removed strict pinning to allow future updates Annotated changes with explanatory comments	`pyproject.toml`
Optimized Dockerfile for caching, size, and readability	Merged RUN steps to reduce layers Cleaned up apt caches after installs Installed Node.js via official setup script Leveraged build mounts for pip and pre-commit caching	`Dockerfile`
Extended and parameterized GitHub Actions workflows	Introduced python-version and uv-version inputs to setup action Increased test and ATS timeouts for reliability Added cibuildwheel and repo caches Set artifact retention periods	`.github/workflows/test.yml` `.github/workflows/release.yml` `.github/workflows/auto-release.yml` `.github/actions/setup-environment/action.yml`
Hardened install and setup scripts	Enabled `set -e` for immediate failure Expanded OS detection to macOS and Fedora/RHEL/CentOS Auto-installed UV if missing and improved venv activation Added success messages and detailed error hints	`scripts/install-deps.sh` `scripts/setup.sh`

Tips and commands

Interacting with Sourcery

Trigger a new review: Comment @sourcery-ai review on the pull request.
Continue discussions: Reply directly to Sourcery's review comments.
Generate a GitHub issue from a review comment: Ask Sourcery to create an
issue from a review comment by replying to it. You can also reply to a
review comment with @sourcery-ai issue to create an issue from it.
Generate a pull request title: Write @sourcery-ai anywhere in the pull
request title to generate a title at any time. You can also comment
@sourcery-ai title on the pull request to (re-)generate the title at any time.
Generate a pull request summary: Write @sourcery-ai summary anywhere in
the pull request body to generate a PR summary at any time exactly where you
want it. You can also comment @sourcery-ai summary on the pull request to
(re-)generate the summary at any time.
Generate reviewer's guide: Comment @sourcery-ai guide on the pull
request to (re-)generate the reviewer's guide at any time.
Resolve all Sourcery comments: Comment @sourcery-ai resolve on the
pull request to resolve all Sourcery comments. Useful if you've already
addressed all the comments and don't want to see them anymore.
Dismiss all Sourcery reviews: Comment @sourcery-ai dismiss on the pull
request to dismiss all existing Sourcery reviews. Especially useful if you
want to start fresh with a new review - don't forget to comment
@sourcery-ai review to trigger a new review!

Customizing Your Experience

Access your dashboard to:

Enable or disable review features such as the Sourcery-generated pull request
summary, the reviewer's guide, and others.
Change the review language.
Add, remove or edit custom review instructions.
Adjust other review settings.

Getting Help

Contact our support team for questions or feedback.
Visit our documentation for detailed guides and information.
Keep in touch with the Sourcery team by following us on X/Twitter, LinkedIn or GitHub.

korbit-ai · 2025-05-17T07:55:18Z

By default, I don't review pull requests opened by bots. If you would like me to review this pull request anyway, you can request a review via the /korbit-review command in a comment.

coderabbitai · 2025-05-17T07:55:20Z

Important

Review skipped

Bot user detected.

To trigger a single review, invoke the @coderabbitai review command.

You can disable this status message by setting the reviews.review_status to false in the CodeRabbit configuration file.

🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

Review comments: Directly reply to a review comment made by CodeRabbit. Example:
- I pushed a fix in commit <commit_id>, please review it.
- Explain this complex logic.
- Open a follow-up GitHub issue for this discussion.
Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
- @coderabbitai explain this code block.
- @coderabbitai modularize this function.
PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
- @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
- @coderabbitai read src/utils.ts and explain its main purpose.
- @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
- @coderabbitai help me debug CodeRabbit configuration file.

Support

Need help? Join our Discord community for assistance with any issues or questions.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

CodeRabbit Commands (Invoked using PR comments)

@coderabbitai pause to pause the reviews on a PR.
@coderabbitai resume to resume the paused reviews.
@coderabbitai review to trigger an incremental review. This is useful when automatic reviews are disabled for the repository.
@coderabbitai full review to do a full review from scratch and review all the files again.
@coderabbitai summary to regenerate the summary of the PR.
@coderabbitai generate sequence diagram to generate a sequence diagram of the changes in this PR.
@coderabbitai resolve resolve all the CodeRabbit review comments.
@coderabbitai configuration to show the current CodeRabbit configuration for the repository.
@coderabbitai help to get help.

Other keywords and placeholders

Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (`.coderabbit.yaml`)

You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
Please see the configuration documentation for more information.
If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

Visit our Documentation for detailed information on how to use CodeRabbit.
Join our Discord Community to get help, request features, and share feedback.
Follow us on X/Twitter for updates and announcements.

codegen-sh · 2025-05-17T07:56:19Z

I see a check failed - I'm on it! 🫡

💻 View my work

…ents

codegen-sh · 2025-05-17T07:59:26Z

✅ Fixed the failing pre-commit checks in this commit. The issues were:

Trailing whitespace in scripts/install-deps.sh
Inconsistent comment alignment in pyproject.toml

The changes have been pushed to the original PR branch.

💻 View my work • React 👍 or 👎

codegen-sh · 2025-05-17T08:00:21Z

I see a check failed - I'm on it! 🫡

💻 View my work

codegen-sh · 2025-05-17T08:03:26Z

✅ Fixed the failing checks in this commit. The issues were:

Trailing whitespace in scripts/install-deps.sh - Removed the trailing whitespace on line 15
UV cache path issue in GitHub Actions workflow - Added an explicit cache path to the setup-uv action in .github/workflows/release.yml to avoid the default path issue

The changes have been pushed to the original PR branch.

💻 View my work • React 👍 or 👎

clee-codegen and others added 30 commits February 26, 2025 23:54

convert to modal.Dict snapshot manager

4177e08

fix: implement modified swebench harness evaluation

b5f1828

Automated pre-commit update

a54c71d

base_commit -> environment_setup_commit

cdcf2d0

add: integrate with postgresql output

7209e5d

Automated pre-commit update

74a019c

Merge branch 'develop' into swebench-sandbox-snapshots

1201832

wip: integration

46171bf

fix: integration with modal deployments

45eb835

wip: initial refactor

7a3b415

fix: refactor run to complete

01236e5

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

cae9518

…napshots

wip: merge changes from run_eval develop

583dd10

add: coarse retries for agent run

60fed54

fix: limit agent modal function concurrency

260d5bc

fix: post-merge bugs

c8cbde9

Merge branch 'develop' into swebench-sandbox-snapshots

5e4b244

Merge branch 'develop' into swebench-sandbox-snapshots

65dd98b

Merge branch 'develop' into swebench-sandbox-snapshots

60177ab

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

e3bcd4e

…napshots

fix: end-to-end to metrics

45993ab

Merge remote-tracking branch 'origin/develop' into swebench-sandbox-s…

bfb7089

…napshots

Update local_run.ipynb

091228a

Update data.py

705853a

Update tracer.py

31c0c30

Update graph.py

c4339c4

Update graph.py

aed3fe0

Apply changes from commit 31ca6aa

d76dffe

Original commit by Ellen Agarwal: fix: Workaround for relace not adding newlines (codegen-sh#907)

Zeeeepa and others added 20 commits May 12, 2025 15:55

Merge pull request #110 from Zeeeepa/merge-pr-108

f21f590

Delete organize_specific_codebase.py

7a969ad

Delete organize_with_codegen_sdk.py

83e1f3e

Delete organize_codebase.py

a21084d

Delete requirements.txt

0aeafec

Delete codegen-on-oss/codegen_on_oss/analyzers/tests directory

86d585a

Add files via upload

92c3eb8

Delete codegen-on-oss/codegen_on_oss/analyzers/mdx_docs_generation.py

8e272d5

Organize visualization files into structured subdirectories

02684b4

Merge pull request #117 from Zeeeepa/codegen-bot/organize-visualizati…

46ce872

…on-files

Delete codegen-on-oss/codegen_on_oss/analyzers/codebase_visualizer.py

8693e9e

s

74c2062

Delete codegen-on-oss/codegen_on_oss/analyzers/parser.py

df04a10

Delete codegen-on-oss/codegen_on_oss/analyzers/schemas.py

14e96cf

a

c59be32

Merge branch 'develop' of https://github.com/Zeeeepa/codegen into dev…

adc6f88

…elop

Initialize project with PLAN folder and PLAN.md

3e0b502

Rename error_analyzer.py to analyzer.py

4ff5c6e

Add files via upload

2be66c6

Fix pre-commit issues: remove trailing whitespace and align TOML comm…

767e931

…ents

Fix trailing whitespace and UV cache path issues

f9d5979

Zeeeepa force-pushed the develop branch from 67d323c to 3761b6c Compare June 12, 2025 08:54

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Test and Update Integration and Deployment Configuration #121

Test and Update Integration and Deployment Configuration #121

Uh oh!

codegen-sh bot commented May 17, 2025 •

edited by sourcery-ai bot

Loading

Uh oh!

sourcery-ai bot commented May 17, 2025 •

edited

Loading

Interacting with Sourcery

Customizing Your Experience

Getting Help

Uh oh!

korbit-ai bot commented May 17, 2025

Uh oh!

coderabbitai bot commented May 17, 2025

Review skipped

Chat

Support

CodeRabbit Commands (Invoked using PR comments)

Other keywords and placeholders

CodeRabbit Configuration File (`.coderabbit.yaml`)

Documentation and Community

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

Test and Update Integration and Deployment Configuration #121

Are you sure you want to change the base?

Test and Update Integration and Deployment Configuration #121

Uh oh!

Conversation

codegen-sh bot commented May 17, 2025 • edited by sourcery-ai bot Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Overview

Changes

1. Updated Python Dependencies

2. Improved Dockerfile

3. Enhanced GitHub Actions Workflows

4. Updated Setup and Installation Scripts

5. Improved Dependency Installation

Testing

Related Issues

Summary by Sourcery

Uh oh!

sourcery-ai bot commented May 17, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Reviewer's Guide

File-Level Changes

Interacting with Sourcery

Customizing Your Experience

Getting Help

Uh oh!

korbit-ai bot commented May 17, 2025

Uh oh!

coderabbitai bot commented May 17, 2025

Review skipped

Chat

Support

CodeRabbit Commands (Invoked using PR comments)

Other keywords and placeholders

CodeRabbit Configuration File (.coderabbit.yaml)

Documentation and Community

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

codegen-sh bot commented May 17, 2025

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

codegen-sh bot commented May 17, 2025 •

edited by sourcery-ai bot

Loading

sourcery-ai bot commented May 17, 2025 •

edited

Loading

CodeRabbit Configuration File (`.coderabbit.yaml`)