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1. pyGenomeTracks pyGenomeTracks Public

   Forked from deeptools/pyGenomeTracks

   python module to plot beautiful and highly customizable genome browser tracks

   Python 2

2. immunogenomics/craft-seq immunogenomics/craft-seq Public

   Code for analysis of CRAFT-seq data

   Jupyter Notebook 2

3. ArchRWrappers ArchRWrappers Public

   An R package with some useful functions that extend ArchR for scATAC data analysis

   R 1

4. Plot COLOC results Plot COLOC results

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   ggColocManhattanSingle <- function(

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       summ.1, chr = "CHR", bp = "BP", p = "P", snp = "SNP",

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       summ.1.name = expression(paste("", -log[10](P))),

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       logp = TRUE, size = 2, lead.snp = NULL, r2 = NULL, ...

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   ) {

5. Create a single Manhattan plot using... Create a single Manhattan plot using the tidyplots package

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   tpManhattanSingle <- function(

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       summ.1, chr = "CHR", bp = "BP", p = "P", snp = "SNP",

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       summ.1.name = "$-log[10](P)$", plot.label = NULL,

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       logp = TRUE, size = 2, lead.snp = NULL, r2 = NULL,

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       plot.width = 100, plot.height = 50, ...