Fix bam indexing for large chromosomes#326
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andrewprzh merged 1 commit intoablab:masterfrom Aug 1, 2025
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Large genomes with large chromosomes (larger than some 500Mb) cannot be indexed by samtools index in "bai" format. The requirement is to use the "csi" index instead. The changes in this commit introduce "csi" when the "bai" fails
andrewprzh
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Aug 1, 2025
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Thank you! I'll test it now. |
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Large genomes with large chromosomes (larger than some 500Mb) cannot be indexed by samtools index in "bai" format. The requirement is to use the "csi" index instead. The changes in this commit introduce "csi" when the "bai" fails.
I have included a pull request below