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Fix Docker container environment for Nextflow 25.04.0 compatibility#13

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adamd3 merged 4 commits intomainfrom
develop
Jul 19, 2025
Merged

Fix Docker container environment for Nextflow 25.04.0 compatibility#13
adamd3 merged 4 commits intomainfrom
develop

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@adamd3 adamd3 commented Jul 19, 2025

Summary

  • Remove problematic conda activate RUN command from Dockerfile
  • Use environment variables to properly set conda environment path
  • Fixes CI failures with Nextflow 25.04.0 where processes couldn't find tools

Test plan

  • Verify Docker image builds successfully
  • Confirm CI passes with Nextflow 25.04.0
  • Validate tools are accessible in container environment

adamd3 added 4 commits July 19, 2025 14:44
- Replace problematic Nextflow 23.10.1 with stable 25.04.0
- Remove debugging output from MAKE_META_FILE process
- Resolve Docker container compatibility issues in CI testing
@adamd3 adamd3 merged commit 4864ba9 into main Jul 19, 2025
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