please see (https://github.com/max-danenhower/pace-rrs-inversions-pigments) for python tools to calculate pigments from Rrs

pigments-from-rrs

Run in-browser

Use the link above to open a JupyterLab session in your browser. Changes you make to the repo during the session will not be saved. To save changes made during the session, download any changed files and push them to this repo.

Note: JupyterLab link above currently points to this PR branch. It was generated using binder.pangeo.io as shown in the image at right. The url will need to be changed to reference alisonpchase/pigments-from-rss on branch main before merge.

Local setup

Build and activate the environment:

conda env create --file environment.yml \
&& conda activate pigments

Install the pigments conda enviroment as a Jupyter kernel:

python -m ipykernel install --user --name pigments

Launch JupyterLab:

jupyter lab

When opening an notebook in a local JupyterLab session, make sure to select the pigments kernel as shown below: