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Support running StreamFlow on Windows #849

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@GlassOfWhiskey GlassOfWhiskey commented Nov 7, 2025

This commit enables support for Windows systems, allowing StreamFlow to be installed and executed on a Windows machine. Note that Linux remains the only supported OS for target execution locations.

@GlassOfWhiskey
Support running StreamFlow on Windows
d73807a 
This commit enables support for Windows systems, allowing StreamFlow to
be installed and executed on a Windows machine. Note that Linux remains
the only supported OS for target execution locations.
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codecov bot commented Nov 7, 2025 •
edited
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❌ 191 Tests Failed:

Tests completed Failed Passed Skipped
196 191 5 1
View the top 3 failed test(s) by shortest run time 
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::exprtool_file_literal
Stack Traces | 0.038s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  lit:
    location: a_file
    class: File
    checksum: sha1$fea23663b9c8ed71968f86415b5ec091bb111448
    size: 19
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/file-literal-ex.cwl
label: exprtool_file_literal
id: 102
doc: Test file literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1397'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_any_null
Stack Traces | 0.039s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression1-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression1-tool.cwl
output:
  output: 1
label: expression_any_null
id: 15
doc: Test explicitly passing null to Any type inputs with default values.
tags:
- inline_javascript
- expression_tool
line: '167'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_any_nullstring_nodefaultany
Stack Traces | 0.039s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression2-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression2-tool.cwl
output:
  output: 2
label: expression_any_nullstring_nodefaultany
id: 19
doc: Testing the string 'null' does not trip up an Any without a default value.
tags:
- inline_javascript
- expression_tool
line: '201'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::success_codes
Stack Traces | 0.039s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/exit-success.cwl
label: success_codes
id: 125
doc: Test successCodes
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output: {}
tags:
- required
- command_line_tool
line: '1774'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_any_string
Stack Traces | 0.04s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression2-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression1-tool.cwl
output:
  output: 2
label: expression_any_string
id: 16
doc: Testing the string 'null' does not trip up an Any with a default value.
tags:
- inline_javascript
- expression_tool
line: '176'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_tool_int_array_output
Stack Traces | 0.04s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-int-job.json
output:
  o:
  - 0
  - 1
  - 2
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-int.cwl
id: 170
label: expression_tool_int_array_output
doc: Test output arrays in a tool (with ints).
tags:
- expression_tool
- inline_javascript
line: '2242'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::no_inputs_commandlinetool
Stack Traces | 0.04s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/no-inputs-tool.cwl
output:
  output:
    checksum: sha1$1334e67fe9eb70db8ae14ccfa6cfb59e2cc24eae
    location: output
    class: File
    size: 4
id: 192
label: no_inputs_commandlinetool
doc: Test CommandLineTool without inputs
tags:
- command_line_tool
- required
line: '2525'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_default_tool_default
Stack Traces | 0.04s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  default_output: workflow_default
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/echo-wf-default.cwl
label: wf_default_tool_default
id: 33
doc: Test that workflow defaults override tool defaults
tags:
- required
- workflow
line: '335'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_any_input_with_integer_provided
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-1.cwl
id: 156
label: clt_any_input_with_integer_provided
doc: Test Any parameter with integer input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2130'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_any
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-expression1-tool.cwl
output:
  output: 1
label: expression_any
id: 14
doc: Test default usage of Any in expressions.
tags:
- inline_javascript
- expression_tool
line: '158'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_parseint
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/parseInt-job.json
output:
  output: 42
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/parseInt-tool.cwl
label: expression_parseint
id: 22
doc: Test ExpressionTool with Javascript engine
tags:
- inline_javascript
- expression_tool
line: '234'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::exprtool_directory_literal
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir7.yml
output:
  dir:
    location: a_directory
    class: Directory
    listing:
    - class: File
      location: whale.txt
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
      size: 1111
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir7.cwl
label: exprtool_directory_literal
id: 101
doc: Test directory literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1370'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_any_input_with_integer_provided
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-wf-1.cwl
id: 161
label: workflow_any_input_with_integer_provided
doc: Test Any parameter with integer input to a workflow
tags:
- workflow
- inline_javascript
line: '2170'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_any_input_with_mixed_array_provided
Stack Traces | 0.041s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-wf-1.cwl
id: 164
label: workflow_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a workflow
tags:
- workflow
- inline_javascript
line: '2194'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_any_input_with_string_provided
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-string.json
output:
  t1: '7'
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-1.cwl
id: 157
label: clt_any_input_with_string_provided
doc: Test Any parameter with string input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2138'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::default_path_notfound_warning
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/default_path_job.yml
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/default_path.cwl
label: default_path_notfound_warning
id: 105
doc: Test warning instead of error when default path is not found
tags:
- required
- command_line_tool
line: '1437'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::docker_json_output_location
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/test-cwl-out2.cwl
label: docker_json_output_location
id: 75
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'location' is provided.
tags:
- shell_command
- command_line_tool
line: '1009'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::env_home_tmpdir_docker_complex
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  results:
    basename: results
    class: File
    checksum: sha1$7d5ca8c0c03e883c56c4eb1ef6f6bb9bccad4d86
    size: 8
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/envvar3.cwl
label: env_home_tmpdir_docker_complex
id: 133
doc: Test $HOME and $TMPDIR are set correctly in Docker without using return 
  code
tags:
- shell_command
- command_line_tool
line: '1865'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::no_outputs_commandlinetool
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/no-outputs-tool.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output: {}
id: 193
label: no_outputs_commandlinetool
doc: Test CommandLineTool without outputs
tags:
- command_line_tool
- required
line: '2538'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::outputbinding_glob_sorted
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that OutputBinding.glob is sorted as specified by POSIX
id: 121
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
label: outputbinding_glob_sorted
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/glob_test.cwl
output:
  letters:
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: a
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: b
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: c
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: w
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: x
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: y
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: z
    class: File
    size: 0
tags:
- required
- command_line_tool
line: '1702'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stderr_redirect_shortcut
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stderr-shortcut.cwl
label: stderr_redirect_shortcut
id: 11
doc: Test command line with stderr redirection, brief syntax
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: Any
tags:
- shell_command
- command_line_tool
line: '119'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdin_from_directory_literal_with_local_file
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-from-dir.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-from-dir-job.yaml
output:
  output:
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    class: File
    size: 13
id: 189
label: stdin_from_directory_literal_with_local_file
doc: Pipe to stdin from user provided local File via a Directory literal
tags:
- command_line_tool
- required
line: '2488'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_noexp
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  wc_output:
    class: File
    checksum: sha1$3596ea087bfdaf52380eae441077572ed289d657
    size: 3
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines9-wf-noET.cwl
id: 178
label: step_input_default_value_noexp
doc: Test default value on step input parameter, no ExpressionTool
tags:
- workflow
- required
line: '2342'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_step_connect_undeclared_param
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/pass-unconnected.cwl
label: wf_step_connect_undeclared_param
id: 131
doc: Test that it is not an error to connect a parameter to a workflow step, 
  even if the parameter doesn't appear in the `run` process inputs.
output:
  out: "hello inp1\n"
tags:
- required
- workflow
line: '1844'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_any_input_with_file_provided
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-wf-1.cwl
id: 163
label: workflow_any_input_with_file_provided
doc: Test Any parameter with file input to a workflow
tags:
- workflow
- inline_javascript
line: '2186'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_any_input_with_string_provided
Stack Traces | 0.042s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-string.json
output:
  t1: '7'
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-wf-1.cwl
id: 162
label: workflow_any_input_with_string_provided
doc: Test Any parameter with string input to a workflow
tags:
- workflow
- inline_javascript
line: '2178'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_any_input_with_file_provided
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-1.cwl
id: 158
label: clt_any_input_with_file_provided
doc: Test Any parameter with file input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2146'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_any_input_with_mixed_array_provided
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-1.cwl
id: 159
label: clt_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2154'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::directory_output
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir3-job.yml
output:
  outdir:
    class: Directory
    listing:
    - class: File
      location: goodbye.txt
      checksum: sha1$dd0a4c4c49ba43004d6611771972b6cf969c1c01
      size: 24
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir3.cwl
label: directory_output
id: 86
doc: Test directory output
tags:
- required
- command_line_tool
line: '1162'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::hints_import
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/imported-hint.cwl
label: hints_import
id: 104
doc: Test hints with $import
tags:
- required
- command_line_tool
line: '1424'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nested_workflow
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines8-wf.cwl
label: nested_workflow
id: 45
doc: Test nested workflow
tags:
- subworkflow
- workflow
- inline_javascript
line: '446'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::null_missing_params
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "t\n"
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-defined.cwl
label: null_missing_params
id: 108
doc: Test that missing parameters are null (not undefined) in expression
tags:
- inline_javascript
- command_line_tool
line: '1510'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::requirement_workflow_steps
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-wf3.cwl
label: requirement_workflow_steps
id: 48
doc: Test requirements on workflow steps
tags:
- env_var
- workflow
line: '480'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::shelldir_notinterpreted
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  stderr_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Any
    class: File
    size: 0
  stdout_file:
    checksum: sha1$1555252d52d4ec3262538a4426a83a99cfff4402
    location: Any
    class: File
    size: 9
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/shellchar.cwl
label: shelldir_notinterpreted
id: 115
doc: Test that shell directives are not interpreted.
tags:
- required
- command_line_tool
line: '1589'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::shelldir_quoted
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  stderr_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Any
    class: File
    size: 0
  stdout_file:
    checksum: sha1$1555252d52d4ec3262538a4426a83a99cfff4402
    location: Any
    class: File
    size: 9
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/shellchar2.cwl
label: shelldir_quoted
id: 116
doc: Test that shell directives are quoted.
tags:
- shell_command
- command_line_tool
line: '1610'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stderr_redirect_mediumcut
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  output_file:
    class: File
    size: 4
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    location: std.err
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stderr-mediumcut.cwl
label: stderr_redirect_mediumcut
id: 12
doc: Test command line with stderr redirection, named brief syntax
tags:
- shell_command
- command_line_tool
line: '132'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden_2nd_step_null_noexp
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  wc_output:
    class: File
    checksum: sha1$3596ea087bfdaf52380eae441077572ed289d657
    size: 3
id: 188
label: step_input_default_value_overriden_2nd_step_null_noexp
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-null-step-wf-noET.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With null producing first step and no ExpressionTool
tags:
- workflow
- required
line: '2474'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_input_default_missing
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  count_output: 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines5-wf.cwl
label: wf_input_default_missing
id: 31
doc: Test workflow with default value for input parameter (missing)
tags:
- inline_javascript
- workflow
line: '319'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_input_default_provided
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines5-wf.cwl
label: wf_input_default_provided
id: 32
doc: Test workflow with default value for input parameter (provided)
tags:
- inline_javascript
- workflow
line: '327'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_any_input_with_record_provided
Stack Traces | 0.043s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-wf-1.cwl
id: 165
label: workflow_any_input_with_record_provided
doc: Test Any parameter with record input to a tool in a workflow
tags:
- workflow
- inline_javascript
line: '2202'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::any_input_param
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/echo-tool.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-job.json
output:
  out: "hello test env\n"
label: any_input_param
id: 44
doc: Test Any type input parameter
tags:
- required
- command_line_tool
line: '437'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_any_input_with_record_provided
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-1.cwl
id: 160
label: clt_any_input_with_record_provided
doc: Test Any parameter with record input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2162'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::docker_json_output_path
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  foo:
    location: foo
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/test-cwl-out.cwl
label: docker_json_output_path
id: 74
doc: Test support for reading cwl.output.json when running in a Docker container
  and just 'path' is provided.
tags:
- shell_command
- command_line_tool
line: '992'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dockeroutputdir
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  thing:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: thing
    class: File
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/docker-output-dir.cwl
label: dockeroutputdir
id: 103
doc: Test dockerOutputDirectory
tags:
- docker
- command_line_tool
line: '1410'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_inputs
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-job.yaml
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq.cwl
label: dynamic_resreq_inputs
id: 119
doc: Test dynamic resource reqs referencing inputs
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1675'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_wf_optional_file_default
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-workflow-tooldefault.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
id: 182
label: dynamic_resreq_wf_optional_file_default
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  CommandLineTool input has a default value (a local file) and the workflow nor 
  the workflow step does not provide any value for this input.
tags:
- workflow
- resource
line: '2390'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::envvar_req
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-tool1.cwl
label: envvar_req
id: 34
doc: Test EnvVarRequirement
tags:
- env_var
- command_line_tool
line: '343'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_trailingnl
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/string-job.json
output:
  out:
    class: File
    checksum: sha1$6a47aa22b2a9d13a66a24b3ee5eaed95ce4753cf
    location: example.conf
    size: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/iwdr-entry.cwl
label: initial_workdir_trailingnl
id: 57
doc: Test if trailing newline is present in file entry in InitialWorkDir
tags:
- initial_work_dir
- command_line_tool
line: '648'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nameroot_nameext_stdout_expr
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  b:
    checksum: sha1$c4cfd130e7578714e3eef91c1d6d90e0e0b9db3e
    location: whale.xtx
    class: File
    size: 21
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/nameroot.cwl
label: nameroot_nameext_stdout_expr
id: 92
doc: Test nameroot/nameext expression in arguments, stdout
tags:
- required
- command_line_tool
line: '1258'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::requirement_override_hints
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-job.json
output:
  out:
    class: File
    checksum: sha1$cdc1e84968261d6a7575b5305945471f8be199b6
    location: out
    size: 9
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-wf2.cwl
label: requirement_override_hints
id: 47
doc: Test requirements override hints
tags:
- env_var
- workflow
line: '467'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stderr_redirect
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stderr.cwl
label: stderr_redirect
id: 10
doc: Test command line with stderr redirection
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: error.txt
tags:
- shell_command
- command_line_tool
line: '106'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdinout_redirect_docker
Stack Traces | 0.044s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  output_txt:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat4-tool.cwl
label: stdinout_redirect_docker
id: 13
doc: Test command execution in Docker with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '145'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::cl_gen_arrayofarrays
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/nested-array-job.yml
output:
  echo:
    checksum: sha1$3f786850e387550fdab836ed7e6dc881de23001b
    location: echo.txt
    class: File
    size: 2
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/nested-array.cwl
label: cl_gen_arrayofarrays
id: 94
doc: Test command line generation of array-of-arrays
tags:
- required
- command_line_tool
line: '1285'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::directory_literal_with_literal_file_nostdin
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-from-dir.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-from-dir-with-literal-file.yaml
output:
  output_file:
    checksum: sha1$ef88e689559565999700d6fea7cf7ba306d04360
    class: File
    size: 26
id: 191
label: directory_literal_with_literal_file_nostdin
doc: Test non-stdin reference to literal File via a Directory literal
tags:
- command_line_tool
- required
line: '2512'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_filesizes
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-dir-job.yaml
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-dir.cwl
label: dynamic_resreq_filesizes
id: 130
doc: Test dynamic resource reqs referencing the size of Files inside a Directory
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1830'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_wf
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-job.yaml
id: 126
doc: Test simple workflow with a dynamic resource requirement
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-workflow.cwl
label: dynamic_resreq_wf
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- workflow
line: '1782'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initialworkpath_output
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output: {}
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/initialwork-path.cwl
label: initialworkpath_output
id: 112
doc: Test that file path in $(inputs) for initialworkdir is in $(outdir).
tags:
- initial_work_dir
- command_line_tool
line: '1561'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::inline_expressions
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc4-tool.cwl
label: inline_expressions
id: 58
doc: Test inline expressions
tags:
- inline_javascript
- command_line_tool
line: '661'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::param_notnull_expr
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "f\n"
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/null-defined.cwl
label: param_notnull_expr
id: 109
doc: Test that provided parameter is not null in expression
tags:
- inline_javascript
- command_line_tool
line: '1519'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::requirement_priority
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-job.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/env-wf1.cwl
label: requirement_priority
id: 46
doc: Test requirement priority
tags:
- env_var
- workflow
line: '454'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines9-wf.cwl
label: step_input_default_value
id: 49
doc: Test default value on step input parameter
tags:
- inline_javascript
- workflow
line: '493'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_nullsource
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/file1-null.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-wf.cwl
label: step_input_default_value_nullsource
id: 51
doc: Test use default value on step input parameter with null source
tags:
- inline_javascript
- workflow
line: '509'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int.json
output:
  o: 10
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-wf.cwl
id: 144
label: workflow_integer_input
doc: Test integer workflow input and outputs
tags:
- workflow
- inline_javascript
- expression_tool
line: '1994'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input_default_specified
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int.json
output:
  o: 10
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-default-wf.cwl
id: 147
label: workflow_integer_input_default_specified
doc: Test default integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '2018'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input_default_unspecified
Stack Traces | 0.045s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  o: 8
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-default-wf.cwl
id: 148
label: workflow_integer_input_default_unspecified
doc: Test default integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '2026'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_optional_union_input_file_or_files_with_nothing_provided
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-null.json
output:
  output_file:
    checksum: sha1$503458abf7614be3fb26d85ff5d8f3e17aa0a552
    basename: output.txt
    location: Any
    class: File
    size: 10
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-or-files.cwl
id: 155
label: clt_optional_union_input_file_or_files_with_nothing_provided
doc: Test input union type or File or File array to a tool with null specified.
tags:
- command_line_tool
- inline_javascript
line: '2115'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::directory_input_param_ref
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir.cwl
label: directory_input_param_ref
id: 84
doc: Test directory input with parameter reference
tags:
- shell_command
- command_line_tool
line: '1134'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::env_home_tmpdir
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output: {}
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/envvar.cwl
label: env_home_tmpdir
id: 95
doc: Test $HOME and $TMPDIR are set correctly
tags:
- shell_command
- command_line_tool
line: '1298'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expr_reference_self_noinput
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  args: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stage-unprovided-file.cwl
label: expr_reference_self_noinput
id: 124
doc: Test that expression engine does not fail to evaluate reference to self 
  with unprovided input
tags:
- required
- command_line_tool
line: '1763'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expression_outputEval
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc2-tool.cwl
label: expression_outputEval
id: 23
doc: Test outputEval to transform output
tags:
- inline_javascript
- command_line_tool
line: '242'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::format_checking
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_2330
    size: 1111
    class: File
    checksum: sha1$97fe1b50b4582cebc7d853796ebd62e3e163aa3f
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest.cwl
label: format_checking
id: 64
doc: Test simple format checking.
tags:
- required
- command_line_tool
line: '867'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_empty_writable_docker
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/writable-dir-docker.cwl
label: initial_workdir_empty_writable_docker
id: 118
doc: Test empty writable dir with InitialWorkDirRequirement inside Docker
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1653'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_expr
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/arguments-job.yml
output:
  classfile:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Hello.class
    class: File
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/linkfile.cwl
label: initial_workdir_expr
id: 91
doc: Test expression in InitialWorkDir listing
tags:
- initial_work_dir
- command_line_tool
line: '1245'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::multiple_glob_expr_list
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/abc.json
output:
  files:
  - location: a
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: b
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
  - location: c
    size: 0
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/glob-expr-list.cwl
label: multiple_glob_expr_list
id: 76
doc: Test support for returning multiple glob patterns from expression
tags:
- required
- command_line_tool
line: '1026'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nested_workflow_noexp
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  wc_output:
    class: File
    checksum: sha1$3596ea087bfdaf52380eae441077572ed289d657
    size: 3
id: 180
label: nested_workflow_noexp
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines8-wf-noET.cwl
doc: Test nested workflow, without ExpressionTool
tags:
- workflow
- subworkflow
line: '2366'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::no_inputs_workflow
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/no-inputs-wf.cwl
output:
  output:
    checksum: sha1$1334e67fe9eb70db8ae14ccfa6cfb59e2cc24eae
    location: output
    class: File
    size: 4
id: 194
label: no_inputs_workflow
doc: Test Workflow without inputs
tags:
- workflow
- required
line: '2547'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::no_outputs_workflow
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/no-outputs-wf.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output: {}
id: 195
label: no_outputs_workflow
doc: Test Workflow without outputs
tags:
- workflow
- required
line: '2560'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::rename
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/rename-job.json
output:
  outfile:
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    location: fish.txt
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/rename.cwl
label: rename
id: 56
doc: Test InitialWorkDirRequirement with expression in filename.
tags:
- initial_work_dir
- command_line_tool
line: '634'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdinout_redirect
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  output:
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    class: File
    location: output
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-tool.cwl
label: stdinout_redirect
id: 21
doc: Test command execution in with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '221'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdout_redirect_docker
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-tool-docker.cwl
label: stdout_redirect_docker
id: 7
doc: Test command execution in Docker with stdout redirection
tags:
- docker
- command_line_tool
line: '67'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdout_redirect_mediumcut_docker
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: cat-out
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-tool-mediumcut.cwl
label: stdout_redirect_mediumcut_docker
id: 9
doc: Test command execution in Docker with mediumcut stdout redirection
tags:
- docker
- command_line_tool
line: '93'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdout_redirect_shortcut_docker
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-tool-shortcut.cwl
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: Any
    size: 13
label: stdout_redirect_shortcut_docker
id: 8
doc: Test command execution in Docker with shortcut stdout redirection
tags:
- docker
- command_line_tool
line: '80'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  count_output: 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-wf.cwl
label: step_input_default_value_overriden
id: 52
doc: Test default value on step input parameter overridden by provided source
tags:
- inline_javascript
- workflow
line: '517'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden_2nd_step_noexp
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  wc_output:
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
    size: 2
id: 186
label: step_input_default_value_overriden_2nd_step_noexp
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With passthrough first step and no ExpressionTool
tags:
- workflow
- required
line: '2450'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden_noexp
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  wc_output:
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
    size: 2
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-wf-noET.cwl
id: 179
label: step_input_default_value_overriden_noexp
doc: Test default value on step input parameter overridden by provided source, 
  no ExpressionTool
tags:
- workflow
- required
line: '2354'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_ignored_null
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  out: "\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/vf-concat.cwl
label: valuefrom_ignored_null
id: 68
doc: Test that valueFrom is ignored when the parameter is null
tags:
- inline_javascript
- command_line_tool
line: '928'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_parseInt
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines1-wf.cwl
label: wf_wc_parseInt
id: 24
doc: Test two step workflow with imported tools
tags:
- inline_javascript
- workflow
line: '250'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input_optional_specified
Stack Traces | 0.046s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int.json
output:
  o: 10
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-optional-wf.cwl
id: 145
label: workflow_integer_input_optional_specified
doc: Test optional integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '2002'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::any_outputSource_compatibility
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/any-type-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/any-type-compat.cwl
output:
  output1:
  - hello
  - world
  output2:
  - foo
  - bar
  output3: hello
label: any_outputSource_compatibility
id: 20
doc: Testing Any type compatibility in outputSource
tags:
- required
- workflow
line: '210'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_optional_union_input_file_or_files_with_single_file_provided
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-one-file.json
output:
  output_file:
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    basename: output.txt
    location: Any
    class: File
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-or-files.cwl
id: 154
label: clt_optional_union_input_file_or_files_with_single_file_provided
doc: Test input union type or File or File array to a tool with one file 
  specified.
tags:
- command_line_tool
- inline_javascript
line: '2100'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_initial_workdir
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir5.cwl
label: dynamic_initial_workdir
id: 88
doc: Test dynamic initial work dir
tags:
- shell_command
- initial_work_dir
- command_line_tool
line: '1202'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_wf_optional_file_step_default
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-workflow-stepdefault.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
id: 183
label: dynamic_resreq_wf_optional_file_step_default
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  workflow step provides a default value (a local file) for this input and the 
  workflow itself does not provide any value for this input.
tags:
- workflow
- resource
line: '2407'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_empty_writable
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/writable-dir.cwl
label: initial_workdir_empty_writable
id: 117
doc: Test empty writable dir with InitialWorkDirRequirement
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1631'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::stdin_from_directory_literal_with_literal_file
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-from-dir.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-from-dir-with-literal-file.yaml
output:
  output:
    checksum: sha1$ef88e689559565999700d6fea7cf7ba306d04360
    class: File
    size: 26
id: 190
label: stdin_from_directory_literal_with_literal_file
doc: Pipe to stdin from literal File via a Directory literal
tags:
- command_line_tool
- required
line: '2500'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_oneparam_valueFrom
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job3.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf6.cwl
label: wf_scatter_oneparam_valueFrom
id: 82
doc: Test valueFrom eval on scattered input parameter
output:
  out_message:
  - checksum: sha1$98030575f6fc40e5021be5a8803a6bef94aee11f
    location: Any
    class: File
    size: 16
  - checksum: sha1$edcacd50778d98ae113015406b3195c165059dd8
    location: Any
    class: File
    size: 16
tags:
- scatter
- step_input
- workflow
line: '1097'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_file_input_default_unspecified
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  o:
    class: File
    basename: output
    size: 1111
    location: Any
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-default-wf.cwl
id: 150
label: workflow_file_input_default_unspecified
doc: Test File input with default unspecified to workflow
tags:
- workflow
line: '2042'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input_optional_unspecified
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  o: 4
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-optional-wf.cwl
id: 146
label: workflow_integer_input_optional_unspecified
doc: Test optional integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '2010'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_union_default_input_unspecified
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  o: the default value
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-union-input-default-wf.cwl
id: 166
label: workflow_union_default_input_unspecified
doc: Test union type input to workflow with default unspecified
tags:
- workflow
- inline_javascript
- expression_tool
line: '2210'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::writable_stagedfiles
Stack Traces | 0.047s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stagefile-job.yml
output:
  outfile:
    checksum: sha1$b769c7b2e316edd4b5eb2d24799b2c1f9d8c86e6
    size: 1111
    location: bob.txt
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/stagefile.cwl
label: writable_stagedfiles
id: 89
doc: Test writable staged files.
tags:
- initial_work_dir
- command_line_tool
line: '1217'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_optional_union_input_file_or_files_with_many_files_provided
Stack Traces | 0.048s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-array-few-files.json
output:
  output_file:
    checksum: sha1$6d1723861ad5a1260f1c3c07c93076c5a215f646
    basename: output.txt
    location: Any
    class: File
    size: 1114
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-or-files.cwl
id: 153
label: clt_optional_union_input_file_or_files_with_many_files_provided
doc: Test input union type or File or File array to a tool with a few files in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2085'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::directory_input_docker
Stack Traces | 0.048s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir2.cwl
label: directory_input_docker
id: 85
doc: Test directory input in Docker
tags:
- required
- command_line_tool
- shell_command
line: '1148'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::resreq_step_overrides_wf
Stack Traces | 0.048s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/steplevel-resreq.cwl
label: resreq_step_overrides_wf
id: 128
doc: Test that ResourceRequirement on a step level redefines requirement on the 
  workflow level
output:
  out:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
tags:
- resource
- workflow
line: '1806'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_union_default_input_with_file_provided
Stack Traces | 0.048s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-any-file.json
output:
  o: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-union-input-default-wf.cwl
id: 167
label: workflow_union_default_input_with_file_provided
doc: Test union type input to workflow with default specified as file
tags:
- workflow
- inline_javascript
- expression_tool
line: '2218'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::anonymous_enum_in_array
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/anon_enum_inside_array.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/anon_enum_inside_array.yml
output:
  result:
    class: File
    checksum: sha1$2132943d72c39423e0b9425cbc40dfd5bf3e9cb2
    size: 39
id: 196
label: anonymous_enum_in_array
doc: Test an anonymous enum inside an array inside a record
tags:
- command_line_tool
- required
line: '2568'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::booleanflags_cl_noinputbinding
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/bool-empty-inputbinding-job.json
output:
  args: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/bool-empty-inputbinding.cwl
label: booleanflags_cl_noinputbinding
id: 123
doc: Test that boolean flags do not appear on command line if inputBinding is 
  empty and not null
tags:
- required
- command_line_tool
line: '1752'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_file_size_property_with_multi_file
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-array-few-files.json
output:
  output_file:
    checksum: sha1$9def39730e8012bd09bf8387648982728501737d
    basename: output.txt
    location: Any
    class: File
    size: 31
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/size-expression-tool.cwl
id: 175
label: clt_file_size_property_with_multi_file
doc: Test use of size in expressions for a few files
tags:
- command_line_tool
- inline_javascript
line: '2311'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::directory_secondaryfiles
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4.cwl
label: directory_secondaryfiles
id: 87
doc: Test directories in secondaryFiles
tags:
- shell_command
- command_line_tool
line: '1187'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::env_home_tmpdir_docker
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output: {}
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/envvar2.cwl
label: env_home_tmpdir_docker
id: 96
doc: Test $HOME and $TMPDIR are set correctly in Docker
tags:
- shell_command
- command_line_tool
line: '1306'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::expressionlib_tool_wf_override
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  out:
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
    location: whatever.txt
    class: File
    size: 2
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/js-expr-req-wf.cwl#wf
label: expressionlib_tool_wf_override
id: 97
doc: Test that expressionLib requirement of individual tool step overrides 
  expressionLib of workflow.
tags:
- inline_javascript
- workflow
line: '1314'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_output
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/initialworkdirrequirement-docker-out-job.json
output:
  OUTPUT:
    checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
    location: ref.fasta
    secondaryFiles:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      location: ref.fasta.fai
      class: File
      size: 0
    class: File
    size: 12010
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/initialworkdirrequirement-docker-out.cwl
label: initial_workdir_output
id: 98
doc: Test output of InitialWorkDir
tags:
- docker
- initial_work_dir
- command_line_tool
line: '1328'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::input_file_literal
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-tool.cwl
label: input_file_literal
id: 90
doc: Test file literal as input
tags:
- required
- command_line_tool
line: '1232'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::job_input_secondary_subdirs
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4-subdir-1-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4.cwl
id: 136
label: job_input_secondary_subdirs
doc: Test specifying secondaryFiles in subdirectories of the job input document.
tags:
- shell_command
- command_line_tool
line: '1900'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden_2nd_step
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  count_output: 1
id: 185
label: step_input_default_value_overriden_2nd_step
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-extra-step-wf.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With passthrough first step
tags:
- workflow
- inline_javascript
line: '2440'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_constant_overrides_inputs
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/array-of-strings-job.yml
output:
  args:
  - replacementValue
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/valueFrom-constant.cwl
label: valuefrom_constant_overrides_inputs
id: 129
doc: Test valueFrom with constant value overriding provided array inputs
tags:
- required
- command_line_tool
line: '1820'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_nomultiple
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines6-job.json
output:
  count_output: 32
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines13-wf.cwl
label: wf_wc_nomultiple
id: 30
doc: Test that no MultipleInputFeatureRequirement is necessary when workflow 
  step source is a single-item list
tags:
- inline_javascript
- workflow
line: '308'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflowstep_valuefrom_string
Stack Traces | 0.049s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  val: "moocow\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom4-wf.cwl
id: 168
label: workflowstep_valuefrom_string
doc: Test valueFrom on workflow step from literal (string).
tags:
- workflow
- step_input
line: '2226'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initworkdir_expreng_requirements
Stack Traces | 0.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  foo:
    checksum: sha1$63da67422622fbf9251a046d7a34b7ea0fd4fead
    class: File
    location: foo.txt
    size: 22
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/template-tool.cwl
label: initworkdir_expreng_requirements
id: 6
doc: Test InitialWorkDirRequirement ExpressionEngineRequirement.engineConfig 
  feature
tags:
- initial_work_dir
- inline_javascript
- command_line_tool
line: '53'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_emptylist
Stack Traces | 0.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-empty-job1.json
output:
  out: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf1.cwl
label: wf_scatter_emptylist
id: 39
doc: Test workflow scatter with single empty list parameter
tags:
- scatter
- workflow
line: '392'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_scatter_multiple_flattened
Stack Traces | 0.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines7-wf.cwl
label: wf_wc_scatter_multiple_flattened
id: 29
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior
tags:
- multiple_input
- inline_javascript
- workflow
line: '297'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_scatter_multiple_merge
Stack Traces | 0.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines4-wf.cwl
label: wf_wc_scatter_multiple_merge
id: 27
doc: Test single step workflow with Scatter step and two data links connected to
  same input, default merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '275'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_scatter_multiple_nested
Stack Traces | 0.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines6-job.json
output:
  count_output:
  - 32
  - 2
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines6-wf.cwl
label: wf_wc_scatter_multiple_nested
id: 28
doc: Test single step workflow with Scatter step and two data links connected to
  same input, nested merge behavior
tags:
- scatter
- multiple_input
- inline_javascript
- workflow
line: '286'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::cl_empty_array_input
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty-array-job.json
output:
  args: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty-array-input.cwl
label: cl_empty_array_input
id: 127
doc: Test that empty array input does not add anything to command line
tags:
- required
- command_line_tool
line: '1796'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_file_size_property_with_empty_file
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-array-one-empty-file.json
output:
  output_file:
    checksum: sha1$dad5a8472b87f6c5ef87d8fc6ef1458defc57250
    basename: output.txt
    location: Any
    class: File
    size: 11
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/size-expression-tool.cwl
id: 174
label: clt_file_size_property_with_empty_file
doc: Test use of size in expressions for an empty file
tags:
- command_line_tool
- inline_javascript
line: '2296'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::job_input_subdir_primary_and_secondary_subdirs
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4-subdir-2-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir4.cwl
id: 137
label: job_input_subdir_primary_and_secondary_subdirs
doc: Test specifying secondaryFiles in same subdirectory of the job input as the
  primary input file.
tags:
- shell_command
- command_line_tool
line: '1915'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::schemadef_req_tool_param
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/schemadef-tool.cwl
label: schemadef_req_tool_param
id: 59
doc: Test SchemaDefRequirement definition used in tool parameter
tags:
- schema_def
- command_line_tool
line: '671'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::schemadef_req_wf_param
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/schemadef-job.json
output:
  output:
    location: output.txt
    size: 12
    class: File
    checksum: sha1$f12e6cfe70f3253f70b0dbde17c692e7fb0f1e5e
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/schemadef-wf.cwl
label: schemadef_req_wf_param
id: 60
doc: Test SchemaDefRequirement definition used in workflow parameter
tags:
- schema_def
- workflow
line: '685'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_records_inputs_and_outputs
Stack Traces | 0.051s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/record-output-job.json
output:
  orec:
    ofoo:
      location: foo
      size: 1111
      class: File
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    obar:
      location: bar
      size: 12010
      class: File
      checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/record-output-wf.cwl
id: 143
label: workflow_records_inputs_and_outputs
doc: Test record type inputs to and outputs from workflows.
tags:
- workflow
- shell_command
line: '1972'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::cl_optional_inputs_missing
Stack Traces | 0.052s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - hello.txt
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat1-testcli.cwl
label: cl_optional_inputs_missing
id: 4
doc: Test command line with optional input (missing)
tags:
- required
- command_line_tool
line: '35'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::dynamic_resreq_wf_optional_file_wf_default
Stack Traces | 0.052s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dynresreq-workflow-inputdefault.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
id: 184
label: dynamic_resreq_wf_optional_file_wf_default
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  workflow itelf provides a default value (a local file) for this input.
tags:
- workflow
- resource
line: '2424'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::filesarray_secondaryfiles
Stack Traces | 0.052s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/docker-array-secondaryfiles-job.json
output:
  bai_list:
    checksum: sha1$081fc0e57d6efa5f75eeb237aab1d04031132be6
    location: fai.list
    class: File
    size: 386
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/docker-array-secondaryfiles.cwl
label: filesarray_secondaryfiles
id: 100
doc: Test secondaryFiles on array of files.
tags:
- docker
- inline_javascript
- shell_command
- command_line_tool
line: '1355'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::input_dir_inputbinding
Stack Traces | 0.052s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/dir6.cwl
label: input_dir_inputbinding
id: 93
doc: Test directory input with inputBinding
tags:
- shell_command
- command_line_tool
line: '1271'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_wf_step
Stack Traces | 0.052s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom-wf.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom-wf.cwl
label: valuefrom_wf_step
id: 70
doc: Test valueFrom on workflow step.
tags:
- step_input
- inline_javascript
- workflow
line: '946'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::inlinejs_req_expressions
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - -A
  - '2'
  - -B
  - baz
  - -C
  - '10'
  - '9'
  - '8'
  - '7'
  - '6'
  - '5'
  - '4'
  - '3'
  - '2'
  - '1'
  - -D
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/inline-js.cwl
label: inlinejs_req_expressions
id: 106
doc: Test InlineJavascriptRequirement with multiple expressions in the same tool
tags:
- inline_javascript
- command_line_tool
line: '1445'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nameroot_nameext_generated
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/basename-fields-job.yml
output:
  extFile:
    checksum: sha1$301a72c82a835e1737caf30f94d0eec210c4d9f1
    class: File
    size: 5
    location: Any
    path: Any
  rootFile:
    checksum: sha1$b4a583c391e234cf210e1d576f68f674c8ad7ecd
    class: File
    size: 10
    location: Any
    path: Any
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/basename-fields-test.cwl
label: nameroot_nameext_generated
id: 111
doc: Test that nameroot and nameext are generated from basename at execution 
  time by the runner
tags:
- step_input
- workflow
line: '1541'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::schema-def_anonymous_enum_in_array
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/anon_enum_inside_array_inside_schemadef.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/anon_enum_inside_array_inside_schemadef.yml
output:
  result:
    class: File
    checksum: sha1$f17c7d81f66e1520fca25b96b90eeeae5bbf08b0
    size: 39
id: 197
label: schema-def_anonymous_enum_in_array
doc: Test an anonymous enum inside an array inside a record, 
  SchemaDefRequirement
tags:
- command_line_tool
- schema_def
line: '2580'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_wf_step_multiple
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom-job.json
output:
  val: "3\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom2-wf.cwl
label: valuefrom_wf_step_multiple
id: 71
doc: Test valueFrom on workflow step with multiple sources
tags:
- step_input
- inline_javascript
- multiple_input
- workflow
line: '954'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_single_param
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-job1.json
output:
  out:
  - foo one
  - foo two
  - foo three
  - foo four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf1.cwl
label: wf_scatter_single_param
id: 35
doc: Test workflow scatter with single scatter parameter
tags:
- scatter
- workflow
line: '356'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_scatter
Stack Traces | 0.053s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines3-wf.cwl
label: wf_wc_scatter
id: 26
doc: Test single step workflow with Scatter step
tags:
- scatter
- inline_javascript
- workflow
line: '266'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::cl_optional_bindings_provided
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - cat
  - -n
  - hello.txt
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-n-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat1-testcli.cwl
label: cl_optional_bindings_provided
id: 5
doc: Test command line with optional input (provided)
tags:
- required
- command_line_tool
line: '44'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initialworkdir_nesteddir
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test InitialWorkDirRequirement with a nested directory structure from 
  another step
id: 122
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  ya_empty:
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: ya
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/iwdr_with_nested_dirs.cwl
label: initialworkdir_nesteddir
tags:
- initial_work_dir
- workflow
line: '1739'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::input_dir_recurs_copy_writable
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/recursive-input-directory.yml
output:
  output_dir:
    basename: work_dir
    class: Directory
    listing:
    - basename: a
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/a
      size: 0
    - basename: b
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/b
      size: 0
    - basename: c
      class: Directory
      listing:
      - basename: d
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: work_dir/c/d
        size: 0
      location: work_dir/c
    - basename: e
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/e
      size: 0
    location: work_dir
  test_result:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: output.txt
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/recursive-input-directory.cwl
label: input_dir_recurs_copy_writable
id: 107
doc: Test if a writable input directory is recursively copied and writable
tags:
- initial_work_dir
- shell_command
- command_line_tool
line: '1454'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_multiplesources_multipletypes
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/sum-job.json
output:
  result: 12
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/sum-wf.cwl
label: wf_multiplesources_multipletypes
id: 114
doc: Test step input with multiple sources with multiple types
tags:
- step_input
- inline_javascript
- multiple_input
- workflow
line: '1580'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_multiplesources_multipletypes_noexp
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/sum-job.json
output:
  result:
    class: File
    checksum: sha1$ad552e6dc057d1d825bf49df79d6b98eba846ebe
    size: 3
id: 181
label: wf_multiplesources_multipletypes_noexp
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/sum-wf-noET.cwl
doc: Test step input with multiple sources with multiple types, without 
  ExpressionTool
tags:
- workflow
- step_input
- inline_javascript
- multiple_input
line: '2378'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_integer_input_default_and_tool_integer_input_default
Stack Traces | 0.054s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  o: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-int-default-tool-and-wf.cwl
id: 149
label: workflow_integer_input_default_and_tool_integer_input_default
doc: Test default integer tool and workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '2034'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::embedded_subworkflow
Stack Traces | 0.055s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines10-wf.cwl
label: embedded_subworkflow
id: 99
doc: Test embedded subworkflow
tags:
- subworkflow
- workflow
line: '1347'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_wf_step_other
Stack Traces | 0.055s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom-job.json
output:
  val: "3\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom3-wf.cwl
label: valuefrom_wf_step_other
id: 72
doc: Test valueFrom on workflow step referencing other inputs
tags:
- step_input
- inline_javascript
- workflow
line: '962'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_twopar_oneinput_flattenedmerge
Stack Traces | 0.055s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines12-wf.cwl
label: wf_scatter_twopar_oneinput_flattenedmerge
id: 113
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior. Workflow inputs are set as list
tags:
- multiple_input
- inline_javascript
- workflow
line: '1569'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_simple
Stack Traces | 0.055s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/revsort.cwl
label: wf_simple
id: 53
doc: Test simple workflow
tags:
- required
- workflow
line: '525'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::scatter_embedded_subworkflow
Stack Traces | 0.056s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines18-wf.cwl
id: 138
label: scatter_embedded_subworkflow
doc: Test simple scatter over an embedded subworkflow
tags:
- workflow
- inline_javascript
line: '1930'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::clt_optional_union_input_file_or_files_with_array_of_one_file_provided
Stack Traces | 0.057s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/job-input-array-one-empty-file.json
output:
  output_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: output.txt
    location: Any
    class: File
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-or-files.cwl
id: 152
label: clt_optional_union_input_file_or_files_with_array_of_one_file_provided
doc: Test input union type or File or File array to a tool with one file in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2070'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::scatter_multi_input_embedded_subworkflow
Stack Traces | 0.057s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines14-wf.cwl
id: 139
label: scatter_multi_input_embedded_subworkflow
doc: Test simple multiple input scatter over an embedded subworkflow
tags:
- workflow
- scatter
- subworkflow
- multiple_input
- inline_javascript
line: '1939'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_nested_crossproduct_firstempty
Stack Traces | 0.057s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-empty-job3.json
output:
  out: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf3.cwl#main
label: wf_scatter_nested_crossproduct_firstempty
id: 41
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with first list empty
tags:
- scatter
- workflow
line: '410'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_embedded_subworkflow_with_subsubworkflow_and_tool
Stack Traces | 0.057s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines17-wf.cwl
id: 142
label: workflow_embedded_subworkflow_with_subsubworkflow_and_tool
doc: Test subworkflow of mixed depth with tool after
tags:
- workflow
- subworkflow
- inline_javascript
line: '1964'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_embedded_subworkflow_with_tool_and_subsubworkflow
Stack Traces | 0.057s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines16-wf.cwl
id: 141
label: workflow_embedded_subworkflow_with_tool_and_subsubworkflow
doc: Test subworkflow of mixed depth with tool first
tags:
- workflow
- subworkflow
- inline_javascript
line: '1956'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nested_prefixes_arrays
Stack Traces | 0.058s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - bwa
  - mem
  - chr20.fa
  - -XXX
  - -YYY
  - example_human_Illumina.pe_1.fastq
  - -YYY
  - example_human_Illumina.pe_2.fastq
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/bwa-mem-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/binding-test.cwl
label: nested_prefixes_arrays
id: 2
doc: Test nested prefixes with arrays
tags:
- required
- command_line_tool
line: '12'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_dotproduct_twoempty
Stack Traces | 0.058s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-empty-job4.json
output:
  out: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf4.cwl#main
label: wf_scatter_dotproduct_twoempty
id: 43
doc: Test workflow scatter with two empty scatter parameters and dotproduct join
  method
tags:
- scatter
- workflow
line: '428'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_two_dotproduct
Stack Traces | 0.058s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-job2.json
output:
  out:
  - foo one three
  - foo two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf4.cwl#main
label: wf_scatter_two_dotproduct
id: 38
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method
tags:
- scatter
- workflow
line: '383'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::packed_import_schema
Stack Traces | 0.059s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/import_schema-def_job.yml
output:
  output_bam:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: a.bam
    class: File
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/import_schema-def_packed.cwl#main
label: packed_import_schema
id: 135
doc: SchemaDefRequirement with $import, and packed
tags:
- schema_def
- workflow
line: '1887'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_flat_crossproduct_oneempty
Stack Traces | 0.059s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-empty-job2.json
output:
  out: []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf3.cwl#main
label: wf_scatter_flat_crossproduct_oneempty
id: 42
doc: Test workflow scatter with two scatter parameters, one of which is empty 
  and flat_crossproduct join method
tags:
- scatter
- workflow
line: '419'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_nested_crossproduct_secondempty
Stack Traces | 0.059s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-empty-job2.json
output:
  out:
  - []
  - []
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf2.cwl
label: wf_scatter_nested_crossproduct_secondempty
id: 40
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method with second list empty
tags:
- scatter
- workflow
line: '401'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_two_flat_crossproduct
Stack Traces | 0.059s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-job2.json
output:
  out:
  - foo one three
  - foo one four
  - foo two three
  - foo two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf3.cwl#main
label: wf_scatter_two_flat_crossproduct
id: 37
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method
tags:
- scatter
- workflow
line: '374'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_embedded_subworkflow_embedded_subsubworkflow
Stack Traces | 0.059s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines15-wf.cwl
id: 140
doc: Test twice nested subworkflow
label: workflow_embedded_subworkflow_embedded_subsubworkflow
tags:
- workflow
- subworkflow
- inline_javascript
line: '1948'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_two_nested_crossproduct
Stack Traces | 0.06s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-job2.json
output:
  out:
  - - foo one three
    - foo one four
  - - foo two three
    - foo two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-wf2.cwl
label: wf_scatter_two_nested_crossproduct
id: 36
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method
tags:
- scatter
- workflow
line: '365'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflowstep_int_array_input_output
Stack Traces | 0.061s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-int-job.json
output:
  o: 12
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-int-wf.cwl
id: 171
label: workflowstep_int_array_input_output
doc: Test output arrays in a workflow (with ints).
tags:
- workflow
- expression_tool
- inline_javascript
line: '2250'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::record_output_binding
Stack Traces | 0.062s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/record-output-job.json
output:
  orec:
    ofoo:
      location: foo
      size: 1111
      class: File
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    obar:
      location: bar
      size: 12010
      class: File
      checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/record-output.cwl
label: record_output_binding
id: 73
doc: Test record type output binding.
tags:
- shell_command
- command_line_tool
line: '970'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_file_array_output
Stack Traces | 0.062s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-file-job.json
output:
  o:
  - basename: moo
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: Any
    size: 0
  - basename: cow
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: Any
    size: 0
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/output-arrays-file-wf.cwl
id: 172
label: workflow_file_array_output
doc: Test output arrays in a workflow (with Files).
tags:
- workflow
- expression_tool
- inline_javascript
line: '2258'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflowstep_valuefrom_file_basename
Stack Traces | 0.062s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  val1: "whale.txt\n"
  val2: "step1_out\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/step-valuefrom5-wf.cwl
id: 169
label: workflowstep_valuefrom_file_basename
doc: Test valueFrom on workflow step using basename.
tags:
- workflow
- step_input
line: '2234'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::workflow_file_input_default_specified
Stack Traces | 0.063s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/default_path_job.yml
output:
  o:
    class: File
    basename: output
    location: Any
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/io-file-default-wf.cwl
id: 151
label: workflow_file_input_default_specified
doc: Test File input with default specified to workflow
tags:
- workflow
line: '2056'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_oneparam_valuefrom_inputs
Stack Traces | 0.067s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-inputs-wf1.cwl
label: wf_scatter_oneparam_valuefrom_inputs
id: 134
doc: Test workflow scatter with single scatter parameter and two valueFrom using
  $inputs (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1878'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_two_inputfiles_namecollision
Stack Traces | 0.067s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/conflict-job.json
output:
  fileout:
    location: out.txt
    checksum: sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0
    class: File
    size: 25
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/conflict-wf.cwl#collision
label: wf_two_inputfiles_namecollision
id: 83
doc: Test workflow two input files with same name.
tags:
- required
- workflow
line: '1119'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_oneparam_valuefrom
Stack Traces | 0.068s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf1.cwl
label: wf_scatter_oneparam_valuefrom
id: 77
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1052'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_oneparam_valuefrom_twice_current_el
Stack Traces | 0.068s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo two two
  - foo three three
  - foo four four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf5.cwl
label: wf_scatter_oneparam_valuefrom_twice_current_el
id: 81
doc: Test workflow scatter with single scatter parameter and two valueFrom on 
  step input (current el twice)
tags:
- scatter
- step_input
- workflow
line: '1088'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_twoparam_dotproduct_valuefrom
Stack Traces | 0.072s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf4.cwl#main
label: wf_scatter_twoparam_dotproduct_valuefrom
id: 80
doc: Test workflow scatter with two scatter parameters and dotproduct join 
  method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1079'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_compound_doc
Stack Traces | 0.074s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/revsort-packed.cwl#main
label: wf_compound_doc
id: 110
doc: Test compound workflow document
tags:
- required
- workflow
line: '1528'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_twoparam_flat_crossproduct_valuefrom
Stack Traces | 0.074s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job2.json
output:
  out:
  - foo one one three
  - foo one one four
  - foo one two three
  - foo one two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf3.cwl#main
label: wf_scatter_twoparam_flat_crossproduct_valuefrom
id: 79
doc: Test workflow scatter with two scatter parameters and flat_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1070'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_scatter_twoparam_nested_crossproduct_valuefrom
Stack Traces | 0.078s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-job2.json
output:
  out:
  - - foo one one three
    - foo one one four
  - - foo one two three
    - foo one two four
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/scatter-valuefrom-wf2.cwl
label: wf_scatter_twoparam_nested_crossproduct_valuefrom
id: 78
doc: Test workflow scatter with two scatter parameters and nested_crossproduct 
  join method and valueFrom on step input
tags:
- scatter
- step_input
- workflow
line: '1061'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::initial_workdir_secondary_files_expr
Stack Traces | 0.082s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/search-job.json
output:
  outfile:
    class: File
    checksum: sha1$e2dc9daaef945ac15f01c238ed2f1660f60909a0
    location: result.txt
    size: 142
  indexedfile:
    location: input.txt
    class: File
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    secondaryFiles:
    - location: input.txt.idx1
      class: File
      checksum: sha1$1f6fe811644355974cdd06d9eb695d6e859f3b44
      size: 1500
    - location: input.idx2
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx3
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx4
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.txt.idx5
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - location: input.idx6.txt
      class: File
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      size: 0
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: input.txt.idx7
      size: 0
    - checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      class: File
      location: hello.txt
      size: 13
    - class: Directory
      listing:
      - basename: index
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: index
        size: 0
      location: input.txt_idx8
    size: 1111
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/search.cwl#main
label: initial_workdir_secondary_files_expr
id: 55
doc: Test InitialWorkDirRequirement linking input files and capturing 
  secondaryFiles on input and output. Also tests the use of a variety of 
  parameter references and expressions in the secondaryFiles field.
tags:
- initial_work_dir
- inline_javascript
- command_line_tool
line: '551'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::param_evaluation_expr
Stack Traces | 0.099s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/params2.cwl
label: param_evaluation_expr
id: 62
doc: Test parameter evaluation, with support for JS expressions
tags:
- inline_javascript
- command_line_tool
line: '779'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::param_evaluation_noexpr
Stack Traces | 0.1s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/params.cwl
label: param_evaluation_noexpr
id: 61
doc: Test parameter evaluation, no support for JS expressions
tags:
- required
- command_line_tool
line: '699'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_nosource
Stack Traces | 0.105s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-wf.cwl
label: step_input_default_value_nosource
id: 50
doc: Test use default value on step input parameter with empty source
tags:
- inline_javascript
- workflow
line: '501'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::valuefrom_secondexpr_ignored
Stack Traces | 0.11s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  out: "a string\n"
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/vf-concat.cwl
label: valuefrom_secondexpr_ignored
id: 69
doc: Test that second expression in concatenated valueFrom is not ignored
tags:
- inline_javascript
- command_line_tool
line: '937'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::step_input_default_value_overriden_2nd_step_null
Stack Traces | 0.112s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/empty.json
output:
  count_output: 16
id: 187
label: step_input_default_value_overriden_2nd_step_null
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines11-null-step-wf.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With null producing first step
tags:
- workflow
- inline_javascript
line: '2464'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::fileliteral_input_docker
Stack Traces | 0.115s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat3-nodocker.cwl
label: fileliteral_input_docker
id: 120
doc: Test file literal as input without Docker
tags:
- required
- command_line_tool
line: '1689'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::nested_cl_bindings
Stack Traces | 0.133s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - tmap
  - mapall
  - stage1
  - map1
  - --min-seq-length
  - '20'
  - map2
  - --min-seq-length
  - '20'
  - stage2
  - map1
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
  - --seed-length
  - '16'
  - map2
  - --max-seed-hits
  - '-1'
  - --max-seq-length
  - '20'
  - --min-seq-length
  - '10'
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/tmap-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/tmap-tool.cwl
label: nested_cl_bindings
id: 3
doc: Test nested command line bindings
tags:
- schema_def
- command_line_tool
line: '24'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::metadata
Stack Traces | 0.241s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/metadata.cwl
label: metadata
id: 63
doc: Test metadata
tags:
- required
- command_line_tool
line: '859'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::output_secondaryfile_optional
Stack Traces | 0.244s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/optional-output.cwl
job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  optional_file:
  output_file:
    location: output.txt
    size: 13
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
label: output_secondaryfile_optional
id: 67
doc: Test optional output file and optional secondaryFile on output.
tags:
- docker
- command_line_tool
line: '912'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::cl_basic_generation
Stack Traces | 1.73s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/bwa-mem-job.json
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/bwa-mem-tool.cwl
output:
  args:
  - bwa
  - mem
  - -t
  - '2'
  - -I
  - 1,2,3,4
  - -m
  - '3'
  - chr20.fa
  - example_human_Illumina.pe_1.fastq
  - example_human_Illumina.pe_2.fastq
label: cl_basic_generation
id: 1
doc: General test of command line generation
tags:
- required
- command_line_tool
line: '0'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::wf_wc_expressiontool
Stack Traces | 1.73s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/count-lines2-wf.cwl
label: wf_wc_expressiontool
id: 25
doc: Test two step workflow with inline tools
tags:
- inline_javascript
- workflow
line: '258'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::hints_unknown_ignored
Stack Traces | 2.08s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/cat5-tool.cwl
label: hints_unknown_ignored
id: 54
doc: Test unknown hints are ignored.
tags:
- required
- command_line_tool
line: '538'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::format_checking_equivalentclass
Stack Traces | 4.05s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest2-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_1929
    size: 12010
    class: File
    checksum: sha1$971d88faeda85a796752ecf752b7e2e34f1337ce
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest3.cwl
label: format_checking_equivalentclass
id: 66
doc: Test format checking against ontology using equivalentClass.
tags:
- required
- command_line_tool
line: '897'
common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/conformance_test_v1.0.cwltest.yaml::conformance_test_v1::0::cwltest::yaml::format_checking_subclass
Stack Traces | 4.06s run time 
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest2-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_1929
    size: 12010
    class: File
    checksum: sha1$971d88faeda85a796752ecf752b7e2e34f1337ce
tool: 
  file:.../streamflow/common-workflow-language-1c1f122f780075d910fdfdea7e15e46eef3c078d/v1.0/v1.0/formattest2.cwl
label: format_checking_subclass
id: 65
doc: Test format checking against ontology using subclassOf.
tags:
- required
- command_line_tool
line: '882'

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@GlassOfWhiskey GlassOfWhiskey force-pushed the master branch 7 times, most recently from b21f362 to e7820f1 Compare January 12, 2026 08:25
@GlassOfWhiskey GlassOfWhiskey force-pushed the master branch 4 times, most recently from 8c05dac to 4a6edc9 Compare January 24, 2026 13:16
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@GlassOfWhiskey