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90 followers · 39 following

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pair Extraordinairex2Achievement: YOLOAchievement: QuickdrawAchievement: Pull Sharkx3Achievement: Arctic Code Vault ContributorAchievement: Starstruck

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Organizations

@tskit-dev @kr-colab @popsim-consortium @ie2

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andrewkern/README.md

Hi, I’m Andy

I’m a population geneticist using computation and math to understand genetic variation and evolution.

Current interests:

  • deep learning for population genetics
  • open-source tools and simulation-based inference pipelines for genomic data
  • spatial population genetics

Links:

Pinned repos below highlight the tools and projects I’m most actively maintaining.

Pinned Loading

  1. kr-colab/locator kr-colab/locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 52 15

  2. kr-colab/ReLERNN kr-colab/ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 64 12

  3. kr-colab/diploSHIC kr-colab/diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 57 17

  4. slim-community/slim-vscode-tools slim-community/slim-vscode-tools Public

    vscode extension for working with SLiM

    HTML 9 1

  5. kr-colab/discoal kr-colab/discoal Public

    discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

    TeX 49 10

  6. popsim-consortium/stdpopsim popsim-consortium/stdpopsim Public

    A library of standard population genetic models

    Python 138 94