COSD breast mappings

[holtyad]

No description provided.

[Copilot]

Pull request overview

This PR adds COSD V8 breast cancer measurement mappings for TNM staging categories (N and M categories) in both Integrated Stage and Final Pre-Treatment Stage variations. It also updates metastasis site and surgical access type lookup tables.

• Added four new breast measurement transformers for N and M category staging data
• Updated MetastasisSiteLookup to include code "01" for bone metastasis (retired code)
• Added "Z" (Other) mapping to SurgicalAccessTypeLungLookup

Reviewed changes

Copilot reviewed 41 out of 45 changed files in this pull request and generated 8 comments.

Show a summary per file

File	Description
Measurement_nhs_number.md	Added 4 new breast measurement mappings for N/M categories with NHS number field documentation
Measurement_measurement_type_concept_id.md	Added constant value mappings (32828) for the 4 new breast measurements
Measurement_measurement_source_value.md	Added source value documentation for N/M category fields from COSD V8 breast data
Measurement_measurement_source_concept_id.md	Added custom concept IDs for the 4 new breast measurement types
Measurement_measurement_datetime.md	Added datetime transformation logic for the 4 new measurements
Measurement_measurement_date.md	Added date transformation logic for the 4 new measurements
Measurement_measurement_concept_id.md	Added lookup tables mapping N/M category codes to OMOP concepts
Measurement.md	Added references to the 4 new measurement transformation diagrams
CosdV8BreastMeasurement*.json	Added 4 new JSON configuration files for the breast measurements
CosdV8BreastMeasurement*.svg	Added 4 new SVG diagram files visualizing the transformations
MetastasisSiteLookup.cs	Added code "01" for bone metastasis (retired) and added clarifying comments
SurgicalAccessTypeLungLookup.cs	Added mapping for "Z" code to concept "0" (Other)
CosdTransformer.cs	Integrated 4 new breast measurement transformers into the transformation pipeline
CosdV8BreastMeasurement*Record.cs	Added 4 new record classes to hold source data
CosdV8BreastMeasurement*.xml	Added 4 new XML query files extracting breast staging data
CosdV8BreastMeasurement*.cs	Added 4 new transformer classes mapping source to OMOP measurement format
OmopTransformer.csproj	Added file copy directives for the 4 new XML query files

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[Copilot]

@holtyad I've opened a new pull request, #312, to work on those changes. Once the pull request is ready, I'll request review from you.