Skip to content
This repository was archived by the owner on Oct 31, 2025. It is now read-only.

Version 0.1.0

Choose a tag to compare

@attlih attlih released this 29 Aug 09:57
· 49 commits to main since this release
74b7aaa

This release adds a couple new features and a bunch of improvements to existing ones.

New features:

  • perform_permanova() does permutational analysis of variance using package called PERMANOVA
  • perform_pairwise_t_test() has new parameter is_paired which allows paired version of pairwise t-tests
  • clean_stats_results() can be used to rename and remove columns from statistics results
  • Error messages will be logged to a file after init_log()
  • Merging MetaboSet objects will now create dummy (negative incrementing) injection order if injection order differs between modes
  • Sample identification column can now be passed to read_from_excel()

Other changes:

  • mz_rt_plot() plots can now be filtered by p-values and low-quality features can be dropped from a MetaboSet object
  • volcano_plot() plots can be labeled
  • cohens_d() is now able to handle multiple comparisons at once
  • read_from_excel() will now check that mass-to-charge and retention time values are reasonable, limits can be adjusted
  • Column names in statistics results, excluding linear models, follow group + comparison + value style

Bug fixes:

  • Simple imputation fails when only one feature satisfies NA limit
  • ... arguments will be passed forward in perform_correlation_tests()