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Add decontamination step

Version 2

Status: Open.

Feature

#180 In aomlomics/tourmaline;

· ksil-NOAA opened on Nov 3, 2025

Cannot merge AVITI data in qaqc step

Version 2

Status: Open.

#176 In aomlomics/tourmaline;

· ksil-NOAA opened on Aug 27, 2025

Deal with error when snakemake folder gets locked

Status: Open.

#169 In aomlomics/tourmaline;

· ksil91 opened on Apr 21, 2025

Save fastq_summary as tsv in qaqc step

Status: Open.

#168 In aomlomics/tourmaline;

· ksil91 opened on Apr 17, 2025

Feedback from Paul

Status: Open.

#166 In aomlomics/tourmaline;

· lukenoaa opened on Mar 27, 2025

Need to check if taxa reference database file has a header

Status: Open.

#162 In aomlomics/tourmaline;

· ksilnoaa opened on Jan 4, 2025

Add guidance for dereplicating reference databases for ML classifiers to docs

Version 2

Status: Open.

#160 In aomlomics/tourmaline;

· ksilnoaa opened on Dec 2, 2024

Carriage returns in asv_taxa_features.tsv

Version 2

Status: Open.

#158 In aomlomics/tourmaline;

· ksilnoaa opened on Nov 25, 2024

Print out details on samples that are filtered out by dada2

Version 2

Status: Open.

#155 In aomlomics/tourmaline;

· ksilnoaa opened on Oct 31, 2024

Add functionality for Tronko taxa assignment

Version 2

Status: Open.

#154 In aomlomics/tourmaline;

· ksilnoaa opened on Sep 24, 2024

Incorporate filtering capabilities to V2

Version 2

Status: Open.

#153 In aomlomics/tourmaline;

· ksilnoaa opened on Sep 18, 2024

How to prevent Snakemake from re-running rules when their output is already present

Status: Open.

#152 In aomlomics/tourmaline;

· lukenoaa opened on Sep 18, 2024