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[DOCUMENTATION] Modify example from simulate #496

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Modify example from simulate
maylistran01 Mar 30, 2026
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Merge remote-tracking branch 'upstream/v2.1' into update_simulate_doc…
maylistran01 Mar 30, 2026
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62 changes: 33 additions & 29 deletions docs/algorithms.md
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Original file line number Diff line number Diff line change
Expand Up @@ -194,36 +194,40 @@ To run a simulation, the following variables are required:

```python
>>> from leaspy.algo import AlgorithmSettings
>>> visits_params = {
'patient_nb': 200,
'visit_type': "random",
'first_visit_mean': 0.,
'first_visit_std': 0.4,
'time_follow_up_mean': 11,
'time_follow_up_std': 0.5,
'distance_visit_mean': 2 / 12,
'distance_visit_std': 0.75 / 12,
'distance_visit_min': 1/365
}
>>> simulated_data = model.simulate(
algorithm="simulate",
outcomes=["MDS1_total", "MDS2_total", "MDS3_off_total"],
visit_parameters= visits_params
)
>>> visits_params = {
'patient_number': 200,
'visit_type': "random",
'first_visit_mean': 0.,
'first_visit_std': 0.4,
'time_follow_up_mean': 11,
'time_follow_up_std': 0.5,
'distance_visit_mean': 2 / 12,
'distance_visit_std': 0.75 / 12,
'distance_visit_min': 1/365
}

>>> simulated_data = model.simulate(
algorithm="simulate",
features=['MDS1_total','MDS2_total','MDS3_off_total', 'SCOPA_total','MOCA_total','REM_total'],
visit_parameters= visits_params
)

>>> print(simulated_data.data.to_dataframe().set_index(['ID', 'TIME']).head())
ID TIME MDS1_total MDS2_total MDS3_off_total SCOPA_total MOCA_total \
0 63.0 0.130888 0.220548 0.186086 0.083651 0.088756
64.0 0.138080 0.039211 0.289588 0.034846 0.047147
65.0 0.228149 0.068744 0.151979 0.141604 0.131976
66.0 0.208679 0.112899 0.202224 0.192716 0.067183
67.0 0.290484 0.252141 0.255622 0.240425 0.115898

REM_total PUTAMEN_R PUTAMEN_L CAUDATE_R CAUDATE_L
0.555283 0.808789 0.685063 0.546174 0.467885
0.660931 0.758014 0.640209 0.541839 0.474202
0.766028 0.941519 0.738120 0.643509 0.549832
0.671021 0.796510 0.930209 0.657473 0.622322
0.791594 0.955246 0.844813 0.677306 0.638281
MDS1_total MDS2_total MDS3_off_total SCOPA_total MOCA_total \
ID TIME
0 64.354 0.142477 0.070402 0.307691 0.253053 0.209125
64.464 0.097302 0.020990 0.311954 0.335794 0.171103
64.508 0.148835 0.093760 0.268074 0.192328 0.267865
64.774 0.284208 0.202962 0.235623 0.109280 0.230654
64.981 0.188759 0.229823 0.182632 0.204986 0.258558

REM_total
ID TIME
0 64.354 0.152799
64.464 0.181306
64.508 0.185616
64.774 0.316519
64.981 0.189354
```

### Output
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