add circular genome support to bedtools getfasta#1127
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brenodupin wants to merge 3 commits intoarq5x:masterfrom
Open
add circular genome support to bedtools getfasta#1127brenodupin wants to merge 3 commits intoarq5x:masterfrom
brenodupin wants to merge 3 commits intoarq5x:masterfrom
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My team and I are developing tooling around organelles genomes, which are mostly circular mapping.
Extracting fasta from them (specifically features that cross origin or are mapped after it) can be a challenge.
Solves #882 and #1027.
It should be noted that
-circulardoes not work with-split.