0.3.0

What's Changed

• fix: Update alignment and annotation functionality by @jarbesfeld in #79
• feat: Add new statistics tables and figures to analysis notebooks by @jarbesfeld in #81
• feat!: Add updates from score set rerun by @jarbesfeld in #82

Full Changelog: 0.2.0...0.3.0

0.2.0

What's Changed

• test: fix fixture construction by @jsstevenson in #58
• fix: perform appropriate cleanup after seqrepo check by @jsstevenson in #59
• cicd: update github actions versions by @jsstevenson in #62
• style: update ruff by @jsstevenson in #61
• cicd: update precommit and add new hooks by @jsstevenson in #60
• fix: ensure proper ref seq by @jsstevenson in #63
• feat!: Use VRS 2.0 models as primary output by @jsstevenson in #57
• Update notebooks, alignment, and mapping code by @jarbesfeld in #64
• Add check in transcript selection to determine if start and end coordinates fully bound an exon by @jarbesfeld in #66
• Fix typo for experiment set 97 by @jarbesfeld in #67
• Update alignment code for other/noncoding score sets by @jarbesfeld in #68
• chore: add schema refresher by @jsstevenson in #71
• Correct alignment logic, ensure proper variant selection for post-mapped genomic variants by @jarbesfeld in #70
• Update mappings link in README by @jarbesfeld in #72
• chore: remove notebook checkpoint by @jsstevenson in #74
• Update README to indicate 0.1.3 dcd-mapping release by @jarbesfeld in #75
• docs: add citation to readme by @jsstevenson in #77
• feat!: Modify annotations and schemas by @jarbesfeld in #76

Full Changelog: 0.1.3...0.2.0

0.1.3

What's Changed

• docs: add zenodo badge by @jsstevenson in #50
• feat: add data prereq checks to CLI by @jsstevenson in #54
• build: pin dependencies by @jsstevenson in #56

Full Changelog: 0.1.2...0.1.3

0.1.2

What's Changed

• chore: update author list by @jsstevenson in #49

Full Changelog: 0.1.1...0.1.2

0.1.1

What's Changed

• build: add license metadata by @jsstevenson in 3245bcb
• nb: update reqs.txt by @jsstevenson in #48

Full Changelog: 0.1.0...0.1.1

0.1.0

What's Changed

• Add initial notebook by @jarbesfeld in #2
• Add RefSeq url scraping by @jarbesfeld in #4
• display output in notebook by @jarbesfeld in #6
• Add MaveDB Analysis Notebook by @jarbesfeld in #8
• Issue 9 by @jarbesfeld in #11
• package development/refactor work by @jsstevenson in #27
• feat: enable configuration of BLAT binary path by @jsstevenson in #28
• fix: handle latest mavedb API updates by @jsstevenson in #29
• style: update ruff by @jsstevenson in #30
• Analysis refactor changes by @jsstevenson in #31
• build: require >=3.10 by @jsstevenson in #32
• test: reorganize + remove VRS tests from CI by @jsstevenson in #34
• feat!: rename VRS 1.3 class by @jsstevenson in #33
• docs: update READMEs by @jsstevenson in #35
• feat: support ?/Xaa variants by @jsstevenson in #39
• refactor annotate and VRS_map modules by @jsstevenson in #41
• feat: additional analysis refactoring by @jsstevenson in #47
• April/May analysis refactor by @jsstevenson in #46

New Contributors

• @jarbesfeld made their first contribution in #2
• @jsstevenson made their first contribution in #27

Full Changelog: https://github.com/ave-dcd/dcd_mapping/commits/0.1.0