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Updates#15

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AnnieYuan21 wants to merge 4 commits intoavsastry:mainfrom
AnnieYuan21:main
Open

Updates#15
AnnieYuan21 wants to merge 4 commits intoavsastry:mainfrom
AnnieYuan21:main

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@AnnieYuan21
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This pull request include the following changes:

  1. Updates in the create_gene_table notebook to fix the issue with uniprot mapping and kegg naming. Also updated the corresponding annotations files in the data/external folder
  2. Update to step 2_process_data to reflect the changes in nextflow
  3. Added additional comments and instructions to the QC notebooks

Thanks.

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