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32 changes: 32 additions & 0 deletions datasets/run_dbcan-database.yaml
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Name: run_dbcan CAZyme and CGC annotation database on AWS
Description: Description: Database for use with run_dbcan (CAZyme and CGC annotation), including CAZyme, Transporter, Transcription factor, Signaling Transduction Protein, Sulfatase, Peptidase, and Polysaccharide utilization Loci.
Documentation: https://run-dbcan.readthedocs.io/en/latest/
Contact: [email protected]; [email protected]; [email protected]
ManagedBy: Xinpeng Zhang; Haidong Yi; Yanbin Yin
UpdateFrequency: This database will update annually and usually in July/August.
Tags:
- aws-pds
- metagenomics
- microbiome
- benchmark
- bioinformatics
- life sciences
License: There are no restrictions on the use of this data.
Resources:
- Description: run_dbcan CAZyme and CGC annotation database
ARN: NA #SHOULD BE CAHNGED
Region: us-west-2
Type: S3 Bucket
Explore:
- '[Browse Bucket](NA)' #SHOULD BE CHANGED
DataAtWork:
Tutorials:
Tools & Applications:
- Title: run_dbcan
URL: https://run-dbcan.readthedocs.io/en/latest/
AuthorName: Xinpeng Zhang; Haidong Yi; Jinfang Zheng; Le Huang; Qiwei Ge; Yanbin Yin
AuthorURL: https://github.com/bcb-unl/run_dbcan
Publications:
- Title: "dbCAN3: automated carbohydrate-active enzyme and substrate annotation"
URL: https://doi.org/10.1093/nar/gkad328
AuthorName: Jinfang Zheng, Qiwei Ge, Yuchen Yan, Xinpeng Zhang, Le Huang, Yanbin Yin Author Notes