Smart bootstrapping

[wlangera]

Metadata

• update pkg version
• update to checklist 0.5.2
• update citation info
• update NEWS
• checklist checks
• update meta r

Smart bootstrapping

derive_bootstrap_method()

• documentation
• code
• fix if cat_var has multiple values, e.g. valuescat_var <- c("year", "taxonKey")
• unit tests

bootstrap_cube()

• add method parameter
• add roxygen details
• rewrite code
• create unit tests

calculate_bootstrap_ci() (and internal functions?)

• bca calc if column method_boot = "group_specific"
• unit tests

bootstrap_cube_raw()

• R script copy from bootstrap_cube()
• unit tests

Other

• Echo false mistake #73
• Improve DOI funder #82
• implement boot method (use of boot package for bootstrapping and CI calculation)
  • bootstrap_cube()
    • whole cube
    • group specific
    • smart method chooses boot
    • ref_group not possible with boot
    • unit tests
  • calculate_bootstrap_ci()
    • no_bias not possible with boot or list of boot objects
    • whole cube (input is boot object)
    • group specific (input is list of boot objects)
    • unit tests
• test dontrun roxygen examples

Tutorials

• use method argument in current tutorials --> use smart and explain in advanced usage and refer to tutorial below
  • bootstrap-method-cubes
  • bootstrap-interval-calculation
  • visualising-temporal-trends
  • visualising-spatial-trends
• whole-cube-versus-group-specific
  • update whole cube vs group specific tutorial (link)
  • compare performance with boot package