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Rename SORTBAMCLEAN process to more explanatory name

Status: Open.

#170 In bbglab/deepUMIcaller;

· FedericaBrando opened on Dec 12, 2025

Add a checker for validity of sample names in the config file

Status: Open.

#168 In bbglab/deepUMIcaller;

· bkohrn opened on Nov 22, 2025

·  

v1.1.0

Reimplement AS-XS filtering

Status: Open.

#166 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Nov 7, 2025

add options to tune output

Status: Open.

#162 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Oct 29, 2025

Update fgbio containers to v3.0

Status: Open.

#160 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Oct 28, 2025

fix memory issues in coverageglobal

Status: Open.

#151 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Oct 7, 2025

·  

v1.1.0

AM: pileup with clipping and pileup without clipping

Status: Open.

#146 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Sep 15, 2025

container with pybedtools and click

Status: Open.

#144 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Sep 10, 2025

·  

v1.1.0

✨ Set up Copilot instructions

Status: Open.

#137 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Sep 3, 2025

Update test data

Status: Open.

#135 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Sep 2, 2025

·  

v1.1.0

Test metrics with current version of dev branch

probably_done

Status: Open.

#131 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Aug 27, 2025

·  

v1.1.0

Force parent_dna to be different from all individual sample names

Status: Open.

#130 In bbglab/deepUMIcaller;

· FerriolCalvet opened on Aug 27, 2025