⚠️ DEPRECATED

This repository is no longer supported or maintained. No further issues or pull requests will be considered.

Functionalities of both BCGSC's pori_graphkb_python and pori_ipr_python can now be found in BCGSC's pori_python, respectively in pori_python/graphkb and in pori_python/ipr.

GraphKB (Python)

This repository is part of the platform for oncogenomic reporting and interpretation.

Python adapter package for querying the GraphKB API. See the user manual

• Getting Started
  • Install (For developers)
  • Run Tests
• Generating the Documentation
• Deployment (Publishing)

Getting Started

Install (For developers)

clone this repository

git clone https://github.com/bcgsc/pori_graphkb_python
cd pori_graphkb_python

create a virtual environment

python3 -m venv venv
source venv/bin/activate

install the package and its development dependencies

pip install -U pip setuptools
pip install -e .[dev]

Run Tests

pytest tests

Generating the Documentation

User documentation for this repository is hosted in the central PORI repository

Deployment (Publishing)

Install the deployment dependencies

pip install .[deploy]

Build the distribution files

python setup.py install sdist bdist_wheel

Upload the distibutions to the package server (-r is defined in your pypirc)

twine upload -r bcgsc dist/*