Draft
Conversation
- Renamed batch files: batch1-4_curator5_v2.1_output.json (removed dates) - Renamed TSV files: batch1-4_curator5_v2.1_robot.tsv (removed dates) - Renamed all_terms files: curator5_all_terms_v1-v3.json - Removed metadata sections from all JSON files - Files now sorted by batch number for easier organization
- Created outputs/final/ folder for approved definitions - Added curator4_all_terms (33 definitions) - from metpo_definitions_number_of_definitions_10_17.json - Added curator5_all_terms_v3 (29 definitions) - moved from raw/curator5 - Added curator6_all_terms (32 definitions) - generated using v2.1 prompt - Generated ROBOT template TSV files for all three curators - Removed metadata sections from curator4 JSON - All definitions follow OBO Foundry principles with structured sources and quantitative values - Total: 94 definitions ready for ontology integration
- Added parent_class field to all 33 curator4 definitions - Added parent_class_id field with ontology IDs (PATO, GO, BFO, NCIT) - Updated curator4_all_terms.tsv with parent class information - Now compliant with v2.1 prompt format requirements - All definitions follow OBO Foundry genus-differentia pattern
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
In the outputs - final folder are the json and tsv files of the curator4, 5, and 6 definition generations.