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Final definition generation outputs#26

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jedkim-ozaeta wants to merge 5 commits intomainfrom
final-definition-generation-outputs
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Final definition generation outputs#26
jedkim-ozaeta wants to merge 5 commits intomainfrom
final-definition-generation-outputs

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In the outputs - final folder are the json and tsv files of the curator4, 5, and 6 definition generations.

- Renamed batch files: batch1-4_curator5_v2.1_output.json (removed dates)
- Renamed TSV files: batch1-4_curator5_v2.1_robot.tsv (removed dates)
- Renamed all_terms files: curator5_all_terms_v1-v3.json
- Removed metadata sections from all JSON files
- Files now sorted by batch number for easier organization
- Created outputs/final/ folder for approved definitions
- Added curator4_all_terms (33 definitions) - from metpo_definitions_number_of_definitions_10_17.json
- Added curator5_all_terms_v3 (29 definitions) - moved from raw/curator5
- Added curator6_all_terms (32 definitions) - generated using v2.1 prompt
- Generated ROBOT template TSV files for all three curators
- Removed metadata sections from curator4 JSON
- All definitions follow OBO Foundry principles with structured sources and quantitative values
- Total: 94 definitions ready for ontology integration
- Added parent_class field to all 33 curator4 definitions
- Added parent_class_id field with ontology IDs (PATO, GO, BFO, NCIT)
- Updated curator4_all_terms.tsv with parent class information
- Now compliant with v2.1 prompt format requirements
- All definitions follow OBO Foundry genus-differentia pattern
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