openbabel: added pulsar files and fixed linting

[hechth]

No description provided.

[bgruening]

I restarted the tests, there was only one failing test:

Parameter 'fastsearch': the previously selected dataset has entered an unusable state

Thanks for working on this @hechth!

[hechth]

I restarted the tests, there was only one failing test:

Parameter 'fastsearch': the previously selected dataset has entered an unusable state

Thanks for working on this @hechth!

Any idea what is going on there? The test input file seems empty, so can't really figure out what is happening there.

[bgruening]

5
.. ERROR (TestsOutputFailing): Test 1: Cannot specify outputs in a test expecting failure.
.. WARNING (TestsValid): No valid test(s) found.

Was passiert wenn du das mit planemo serve laufen lässt?

[bgruening]

galaxytools/chemicaltoolbox/openbabel/ob_convert.xml

Line 476 in fe65e77

<output name="outfile" compare="contains" file="ob_convert_on_CID2244_obfs.txt" ftype="obfs" >

maybe that helps?

[bgruening]

Those composite tests should work: https://github.com/galaxyproteomics/tools-galaxyp/blob/e579248f105865ce7f2f237ab6fb3f10aab4c582/tools/cardinal/colocalization.xml#L140

is the datatype not upstream?