Skip to content

[ENH] Allow participants.tsv to contain a superset of subject directories and subjects listed in phenotype files #2044

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 7 commits into from
Feb 14, 2025
Merged

[ENH] Allow participants.tsv to contain a superset of subject directories and subjects listed in phenotype files #2044

Changes from 1 commit
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
f734f1f
Update src/schema/objects/files.yaml
ericearl Feb 4, 2025
4ab2679
Update src/schema/objects/files.yaml
ericearl Feb 5, 2025
4781f25
Update src/schema/objects/files.yaml
effigies Feb 5, 2025
9ea17c5
Merge branch 'master' into issue-914-dev
effigies Feb 5, 2025
2f9b5f6
doc(schema): Update intersects() to return the intersection if non-empty
effigies Feb 5, 2025
a8de39d
feat(schema): Require participants.tsv to be a superset of sub_dirs/p…
effigies Feb 5, 2025
4ce9fea
schema: Improve error messages
effigies Feb 13, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions src/schema/objects/files.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -72,6 +72,11 @@ participants:
followed by a list of optional columns describing participants.
Each participant MUST be described by one and only one row.

If this file exists and a `phenotype/` folder is present, then
the `participant_id` entries MUST be the union of all subject directories
and all `participant_id` entries found among phenotypic and assessment data
in the `phenotype/` folder.

Commonly used *optional* columns in `participants.tsv` files are `age`, `sex`,
`handedness`, `strain`, and `strain_rrid`.

Expand Down