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3 changes: 2 additions & 1 deletion src/modality-specific-files/microscopy.md
Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ and a guide for using macros can be found at
https://github.com/bids-standard/bids-specification/blob/master/macros_doc.md
-->
{{ MACROS___make_filename_template("raw", datatypes=["micr"], suffixes=["TEM", "SEM", "uCT", "BF", "DF",
"PC", "DIC", "FLUO", "CONF", "PLI", "CARS", "2PE", "MPE", "SR", "NLO", "OCT", "SPIM", "XPCT"], n_dupes_to_combine=4) }}
"PC", "DIC", "FLUO", "CONF", "PLI", "CARS", "1PE", "2PE", "MPE", "SR", "NLO", "OCT", "SPIM", "XPCT"], n_dupes_to_combine=4) }}

Microscopy data MUST be stored in the `micr` directory.

Expand Down Expand Up @@ -82,6 +82,7 @@ and a guide for using macros can be found at
"CONF",
"PLI",
"CARS",
"1PE",
"2PE",
"MPE",
"SR",
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5 changes: 5 additions & 0 deletions src/schema/objects/suffixes.yaml
Original file line number Diff line number Diff line change
@@ -1,6 +1,11 @@
---
# This file defines valid BIDS file suffixes.
# For rules regarding how suffixes relate to datatypes, see files in `rules/files/raw/`.
OnePE:
value: 1PE
display_name: 1-photon excitation microscopy
description: |
1-photon excitation microscopy imaging data
TwoPE:
value: 2PE
display_name: 2-photon excitation microscopy
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1 change: 1 addition & 0 deletions src/schema/rules/files/raw/micr.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@ microscopy:
- CONF
- PLI
- CARS
- 1PE
- 2PE
- MPE
- SR
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