Improvements in some of the plots Help.

[ypriverol]

Summary by CodeRabbit

• Documentation
  • Improved help text descriptions for mass spectrometry plots, providing clearer guidance on data trends, ion intensity, and peak information.
  • Corrected a minor typographical error in documentation to enhance overall clarity.

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Walkthrough

The changes involve minor documentation improvements in the PMultiQC quantms module. In ms_functions.py, a typographical error in a comment was corrected. In quantms.py, the help text in the draw_ms_information method was updated to enhance clarity and precision for mass spectrometry plot guidance. There were no modifications to functionality or public entities.

Changes

File(s)	Change Summary
pmultiqc/modules/quantms/ms_functions.py	Fixed a typographical error in a comment (changed "resulution" to "resolution").
pmultiqc/modules/quantms/quantms.py	Updated help texts for TIC, BPC, MS1 Peaks, and general statistics in the draw_ms_information method for improved clarity.

Poem

Hopping through commits with a twinkle in my eye,
I fixed a typo so the code can fly high.
With clearer texts for TIC, BPC, and more,
Every plot now sings like a joyful score.
I'm a coding bunny, dancing with delight,
Celebrating these updates from morning till night!

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📥 Commits

Reviewing files that changed from the base of the PR and between 8016b09 and c499fea.

📒 Files selected for processing (2)

• pmultiqc/modules/quantms/ms_functions.py (1 hunks)
• pmultiqc/modules/quantms/quantms.py (4 hunks)

⏰ Context from checks skipped due to timeout of 90000ms (7)

• GitHub Check: test_maxquant
• GitHub Check: test_lfq
• GitHub Check: test_tmt
• GitHub Check: test_dia
• GitHub Check: test_mzid_mgf
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• GitHub Check: Codacy Static Code Analysis

🔇 Additional comments (5)

pmultiqc/modules/quantms/ms_functions.py (1)

12-12: Fixed typo in comment

Corrected "resulution" to "resolution" in the comment, improving the documentation clarity.

pmultiqc/modules/quantms/quantms.py (4)

836-844: Great improvement to the TIC help text!

The updated help text provides a much more comprehensive explanation of Total Ion Chromatograms, including what they represent, how to interpret them, and key aspects to assess. This will significantly enhance user understanding of the plot.

---

860-867: Well-detailed BPC help text

The new Base Peak Chromatogram description clearly explains what BPC represents, how it differs from TIC, and why it's useful for visualizing high-abundance compounds. This is much more informative than the previous placeholder.

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883-901: Excellent MS1 Peaks help text enhancement

The expanded help text for the MS1 Peaks plot provides valuable context about what peak counts represent, how to interpret patterns, and the significance of changes in peak density. The structured format with numbered points makes it easy to understand the key aspects to consider.

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914-921: Improved General Stats help text

The updated text provides a clearer explanation of what the general statistics table displays, including the meaning of TotalCurrent and ScanCurrent metrics, and how to interpret variations across samples.

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[Copilot]

Copilot reviewed 2 out of 2 changed files in this pull request and generated no comments.