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style: format pyproject.toml #54

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jsstevenson merged 1 commit into from
Mar 19, 2025
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style: format pyproject.toml #54

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84 changes: 36 additions & 48 deletions pyproject.toml
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Original file line number Diff line number Diff line change
@@ -1,11 +1,11 @@
[project]
name = "biocommons.example"
authors = [
{ name="biocommons contributors", email="[email protected]" },
{ name = "biocommons contributors", email = "[email protected]" },
]
description = "Example Package"
readme = "README.md"
license = { file="LICENSE.txt" }
license = { file = "LICENSE.txt" }
requires-python = ">=3.10"
classifiers = [
"Programming Language :: Python :: 3",
Expand All @@ -16,19 +16,16 @@ classifiers = [
"Operating System :: OS Independent",
]
dynamic = ["version"]
dependencies = [
"coloredlogs ~= 15.0",
"pyyaml ~= 6.0",
]
dependencies = ["coloredlogs ~= 15.0", "pyyaml ~= 6.0"]

[project.optional-dependencies]
dev = [
"build ~= 0.8",
"ipython ~= 8.4",
"mypy-extensions ~= 1.0",
"pre-commit ~= 3.4",
"pyright~=1.1",
"ruff == 0.4.4",
"build ~= 0.8",
"ipython ~= 8.4",
"mypy-extensions ~= 1.0",
"pre-commit ~= 3.4",
"pyright~=1.1",
"ruff == 0.4.4",
]
tests = [
"pytest-cov ~= 4.1",
Expand All @@ -37,9 +34,7 @@ tests = [
"vcrpy",
"tox ~= 4.15",
]
docs = [
"mkdocs",
]
docs = ["mkdocs"]

[project.scripts]
marvin-quote = "biocommons.example.__main__:main"
Expand All @@ -50,32 +45,20 @@ marvin-quote = "biocommons.example.__main__:main"


[build-system]
requires = [
"setuptools >= 70.1",
"setuptools_scm[toml] ~= 8.1"
]
requires = ["setuptools >= 70.1", "setuptools_scm[toml] ~= 8.1"]
build-backend = "setuptools.build_meta"


[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = [
"src",
]
exclude = [
"__pycache__",
"*.pyc",
]
where = ["src"]
exclude = ["__pycache__", "*.pyc"]
namespaces = true

[tool.setuptools.package-data]
"*" = [
"*.gz",
"*.json",
"*.yaml",
]
"*" = ["*.gz", "*.json", "*.yaml"]


[tool.setuptools_scm]
Expand All @@ -92,8 +75,8 @@ doctest_optionflags = [
"NORMALIZE_WHITESPACE",
]
markers = [
"network: tests that require network connectivity",
"slow: slow tests that should be run infrequently",
"network: tests that require network connectivity",
"slow: slow tests that should be run infrequently",
]


Expand Down Expand Up @@ -130,30 +113,31 @@ line-length = 100

[tool.ruff.lint]
select = [
"F", # https://docs.astral.sh/ruff/rules/#pyflakes-f
"E", "W", # https://docs.astral.sh/ruff/rules/#pycodestyle-e-w
"I", # https://docs.astral.sh/ruff/rules/#isort-i
"N", # https://docs.astral.sh/ruff/rules/#pep8-naming-n
"UP", # https://docs.astral.sh/ruff/rules/#pyupgrade-up
"F", # https://docs.astral.sh/ruff/rules/#pyflakes-f
"E",
"W", # https://docs.astral.sh/ruff/rules/#pycodestyle-e-w
"I", # https://docs.astral.sh/ruff/rules/#isort-i
"N", # https://docs.astral.sh/ruff/rules/#pep8-naming-n
"UP", # https://docs.astral.sh/ruff/rules/#pyupgrade-up
"YTT", # https://docs.astral.sh/ruff/rules/#flake8-2020-ytt
"S", # https://docs.astral.sh/ruff/rules/#flake8-bandit-s
"B", # https://docs.astral.sh/ruff/rules/#flake8-bugbear-b
"A", # https://docs.astral.sh/ruff/rules/#flake8-builtins-a
"C4", # https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4
"S", # https://docs.astral.sh/ruff/rules/#flake8-bandit-s
"B", # https://docs.astral.sh/ruff/rules/#flake8-bugbear-b
"A", # https://docs.astral.sh/ruff/rules/#flake8-builtins-a
"C4", # https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4
"DTZ", # https://docs.astral.sh/ruff/rules/#flake8-datetimez-dtz
"EM", # https://docs.astral.sh/ruff/rules/#flake8-errmsg-em
"EM", # https://docs.astral.sh/ruff/rules/#flake8-errmsg-em
"LOG", # https://docs.astral.sh/ruff/rules/#flake8-logging-log
"G", # https://docs.astral.sh/ruff/rules/#flake8-logging-format-g
"G", # https://docs.astral.sh/ruff/rules/#flake8-logging-format-g
"PIE", # https://docs.astral.sh/ruff/rules/#flake8-pie-pie
"PT", # https://docs.astral.sh/ruff/rules/#flake8-pytest-style-pt
"PT", # https://docs.astral.sh/ruff/rules/#flake8-pytest-style-pt
"RSE", # https://docs.astral.sh/ruff/rules/#flake8-raise-rse
"RET", # https://docs.astral.sh/ruff/rules/#flake8-return-ret
"SIM", # https://docs.astral.sh/ruff/rules/#flake8-simplify-sim
"ARG", # https://docs.astral.sh/ruff/rules/#flake8-unused-arguments-arg
"PTH", # https://docs.astral.sh/ruff/rules/#flake8-use-pathlib-pth
"PL", # https://docs.astral.sh/ruff/rules/#pylint-pl
"PL", # https://docs.astral.sh/ruff/rules/#pylint-pl
"TRY", # https://docs.astral.sh/ruff/rules/#tryceratops-try
"PERF", # https://docs.astral.sh/ruff/rules/#perflint-perf
"PERF", # https://docs.astral.sh/ruff/rules/#perflint-perf
"RUF", # https://docs.astral.sh/ruff/rules/#ruff-specific-rules-ruf
]
fixable = [
Expand All @@ -175,7 +159,11 @@ fixable = [
]
ignore = [
# ignore for compatibility with formatter
"W191", "E111", "E114", "E117", "S321",
"W191",
"E111",
"E114",
"E117",
"S321",
# other
"PLR0913",
]
Expand Down
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