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TAfinder3D identifies toxin-antitoxin loci in bacterial genomes using MMseqs2 sequence homology, HMMER domain detection, and Foldseek 3D structure-based searching. Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Description
Adds recipe for TAfinder3D, a tool for identifying toxin-antitoxin loci in bacterial genomes using sequence homology (MMseqs2), domain detection (HMMER), and 3D structure-based searching (Foldseek).
Notes
noarch: python(incompatible with binary run deps mmseqs2, hmmer, foldseek, prodigal)$PREFIX/share/tafinder3d/