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Add recipe for spechla 1.0.9#63354

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jonasscheid wants to merge 6 commits intobioconda:masterfrom
jonasscheid:add-spechla
Open

Add recipe for spechla 1.0.9#63354
jonasscheid wants to merge 6 commits intobioconda:masterfrom
jonasscheid:add-spechla

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@jonasscheid
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Add new recipe for SpecHLA v1.0.9.

SpecHLA enables full-resolution HLA typing from various sequencing data types including WGS, WES, RNA-seq, and long-read sequencing.

Build

  • Compiles two C++ components (SpecHap, ExtractHAIRs) against conda-provided htslib, arpack, and zlib
  • Installs scripts and HLA reference database to $PREFIX/share/spechla/
  • Builds bowtie2 indexes at install time
  • Installs wrapper scripts (spechla, spechla-extract-hla-reads, spechla-long-read, spechla-assembly, spechla-loh) to $PREFIX/bin/

Test

  • Verifies spechla -h runs and prints expected output
  • Checks compiled binaries (SpecHap, ExtractHAIRs) are on PATH
  • Verifies database directories are installed

@jonasscheid
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@BiocondaBot fetch-artifacts

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