Skip to content

Add NomNom 0.1.0#63381

Open
diegomics wants to merge 8 commits intobioconda:masterfrom
diegomics:master
Open

Add NomNom 0.1.0#63381
diegomics wants to merge 8 commits intobioconda:masterfrom
diegomics:master

Conversation

@diegomics
Copy link

NomNom is a Python tool for converting genomic data tables (CSV, TSV, Excel, LibreOffice, Apple Numbers) into hierarchical YAML files for use in genomic pipelines (i.e., GEP2, GAME). It automatically detects data structure, column types, and paired-end reads among other handy things.


Please read the guidelines for Bioconda recipes before opening a pull request (PR).

General instructions

  • If this PR adds or updates a recipe, use "Add" or "Update" appropriately as the first word in its title.
  • New recipes not directly relevant to the biological sciences need to be submitted to the conda-forge channel instead of Bioconda.
  • PRs require reviews prior to being merged. Once your PR is passing tests and ready to be merged, please issue the @BiocondaBot please add label command.
  • Please post questions on Gitter or ping @bioconda/core in a comment.

Instructions for avoiding API, ABI, and CLI breakage issues

Conda is able to record and lock (a.k.a. pin) dependency versions used at build time of other recipes.
This way, one can avoid that expectations of a downstream recipe with regards to API, ABI, or CLI are violated by later changes in the recipe.
If not already present in the meta.yaml, make sure to specify run_exports (see here for the rationale and comprehensive explanation).
Add a run_exports section like this:

build:
  run_exports:
    - ...

with ... being one of:

Case run_exports statement
semantic versioning {{ pin_subpackage("myrecipe", max_pin="x") }}
semantic versioning (0.x.x) {{ pin_subpackage("myrecipe", max_pin="x.x") }}
known breakage in minor versions {{ pin_subpackage("myrecipe", max_pin="x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
known breakage in patch versions {{ pin_subpackage("myrecipe", max_pin="x.x.x") }} (in such a case, please add a note that shortly mentions your evidence for that)
calendar versioning {{ pin_subpackage("myrecipe", max_pin=None) }}

while replacing "myrecipe" with either name if a name|lower variable is defined in your recipe or with the lowercase name of the package in quotes.

Bot commands for PR management

Please use the following BiocondaBot commands:

Everyone has access to the following BiocondaBot commands, which can be given in a comment:

@BiocondaBot please add label Add the please review & merge label.
@BiocondaBot please fetch artifacts Post links to CI-built packages/containers.
You can use this to test packages locally.

Note that the @BiocondaBot please merge command is now depreciated. Please just squash and merge instead.

Also, the bot watches for comments from non-members that include @bioconda/<team> and will automatically re-post them to notify the addressed <team>.

diegomics and others added 8 commits February 13, 2026 00:07
Add meta.yaml for nomnom package with version 0.1.0
Add run_exports to meta.yaml for nomnom package
Co-authored-by: Thanh Lee <thanh@cloudbinfies.com>
Co-authored-by: Thanh Lee <thanh@cloudbinfies.com>
Co-authored-by: Thanh Lee <thanh@cloudbinfies.com>
Co-authored-by: Thanh Lee <thanh@cloudbinfies.com>
@diegomics
Copy link
Author

@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Mar 10, 2026
@diegomics
Copy link
Author

Hi! This is a resubmission, please see #62627

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

please review & merge set to ask for merge

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants