Gene modules: add Cell Atlas page and improve API endpoints

[nuno-agostinho]

Replaces #137

Changelog

Changes to models

• Allow same gene in multiple modules
• Add module membership and eigenvalues
• Return top gene hubs and transcription factors for a module based on gene membership scores

New and updated pages

• Add gene module page in Cell Atlas
  • Gene module statistics
  • Module activity plot
  • Compare lists of genes between gene modules
• Improve gene page in Cell Atlas
  • Improve layout of gene modules and include gene membership scores
  • Fix orthogroup link in gene page
• Improve gene detail page in Database Entries
  • Gene module tables now show dataset, module name and respective membership scores

REST

• New API endpoints to retrieve gene modules

Testing

Warning

Requires database with gene module data

• Pages in Cell Atlas
  • Gene page should have improved layout of gene modules and show orthogroup link
  • New page to visualise gene modules
• Pages in Database Entries
  • Gene modules (list and detail) should look the same before and after the update
  • Genes (detail) should show improved gene module table
• Test new API endpoints to retrieve gene modules:
  • api/v1/gene_modules
  • api/v1/gene_modules_membership
  • api/v1/gene_modules_similarity
  • api/v1/gene_modules_eigenvalues

[codecov]

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[github-actions]

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